PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00650.1.g00230.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 210aa    MW: 22409.3 Da    PI: 6.8669
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00650.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.1e-116793127
                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                    ++++ C +++rtG C++G +CkF+H+p
  Zmw_sc00650.1.g00230.1.sm.mkhc 67 PGEPDCTYYLRTGLCRFGMTCKFNHPP 93
                                    5789*********************97 PP
2zf-CCCH43.17e-14145170227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++elC+f++r+G+Ck+G++CkF H++
  Zmw_sc00650.1.g00230.1.sm.mkhc 145 GEELCKFYSRYGICKFGANCKFDHPM 170
                                     78**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4556694IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-56693IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-86893IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-57194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-47292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544143171IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7143170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-6144170IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-11145170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-6147168IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEDAGRESAP AAVTVSAVPA PPQPSTTKAA ADTSSPDPSA LYEEGMWQQM AMDSGATMQP  60
GPYPEWPGEP DCTYYLRTGL CRFGMTCKFN HPPDRNLAIA SARMKGEYPE RVGHPECQTG  120
TCKFGPTVSC SHLGPNKLMD LLNKGEELCK FYSRYGICKF GANCKFDHPM AAPIGVYAYG  180
FNASVSASAS TNVAVVRRLL GSPSGSGYTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971057.18e-79zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB55e-62C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLK3XI362e-77K3XI36_SETIT; Uncharacterized protein
STRINGSi001558m3e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17256611
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]