PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00656.1.g00260.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GeBP

Protein Properties

Length: 256aa MW: 28010.3 Da PI: 6.3221

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00656.1.g00260.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	54.6	3.1e-17	45	133	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 +q+lws+ De++lL G fk + g+ p d+ ++yef+k+sis + k + K++rLK Kf++ + s+ Zmw_sc00656.1.g00260.1.sm.mk 45 AQKLWSDADEVALLTGAAAFKGRSGVAPRLpDMGELYEFLKDSISPHLDKAKVYYKLKRLKSKFQHSAPG-------ASST 118 79**********************98877********************************99888.......7899 PP DUF573 83 ehdqkifelskkiWg 97 +hd+ + +ls +Wg Zmw_sc00656.1.g00260.1.sm.mk 119 PHDRLVRDLSADLWG 133 999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.8E-16	46	133	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MPSKRPSPHA SDRKRKPRAF PDSTTLAAVA AVAAAPSASS SRGAAQKLWS DADEVALLTG 60 AAAFKGRSGV APRLPDMGEL YEFLKDSISP HLDKAKVYYK LKRLKSKFQH SAPGASSTPH 120 DRLVRDLSAD LWGAELAHQV EEGERPEEDG ADDEEAEGVN AIQVHTGGDS EGPQPERLPI 180 VREVLGEHWR LNRQALSVVS LEKGLFQVAP EKADAAEAKW RQQLEADMRM QMRWHDLGKE 240 AGQPNLPFIA DADRQT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002436676.2	2e-78	STOREKEEPER protein
TrEMBL	A0A0A9S6C6	5e-83	A0A0A9S6C6_ARUDO; Uncharacterized protein
STRING	Si006601m	3e-75	(Setaria italica)
STRING	Sb10g006920.1	4e-76	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2682	27	63