PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00658.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 224aa    MW: 23835.5 Da    PI: 4.3611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00658.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-181968255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +ykGVr++k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  Zmw_sc00658.1.g00140.1.am.mk 19 RYKGVRFRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 68
                                  7********.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-181978IPR016177DNA-binding domain
PROSITE profilePS5103221.8381977IPR001471AP2/ERF domain
SMARTSM003801.2E-321983IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-271979IPR001471AP2/ERF domain
CDDcd000188.03E-191979No hitNo description
PfamPF008476.8E-111968IPR001471AP2/ERF domain
PRINTSPR003672.0E-82031IPR001471AP2/ERF domain
PRINTSPR003672.0E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDDGAGASNG EVSSPPERRY KGVRFRKWGR WVSEIRMPNS RERIWLGSYE SAEKAARAFD  60
AAAVCLRGSR AGSLNFPESP PDVRYIPGAQ LTPEQIQAEA VRHANQPVIS PVAAANTAAS  120
SQEAAPAGSE SIDRMAMSMP GLPASTYSSL ATPGCGDDAL DWSFMDALPS MPVSSAGTNA  180
ELVSAMDDFM LGSPHPVMPP SGGAQDMIDG DDDHAFISDD LWRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-12478773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973610.12e-98ethylene-responsive transcription factor ERF018
TrEMBLK3YLA44e-97K3YLA4_SETIT; Uncharacterized protein
STRINGSi015027m8e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144