PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00666.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22505.8 Da    PI: 10.6768
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00666.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.52.3e-25101151151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   k+ien + rqvtfskRr+g++ KA+EL vLCda+v v++fsstg+ly+yss
  Zmw_sc00666.1.g00050.1.am.mk 101 KKIENITSRQVTFSKRRTGLFNKAKELAVLCDAQVGVLVFSSTGRLYDYSS 151
                                   68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-3593152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.38593153IPR002100Transcription factor, MADS-box
CDDcd002652.72E-3395153No hitNo description
PRINTSPR004041.2E-2495115IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-2595160IPR002100Transcription factor, MADS-box
PfamPF003194.9E-24102149IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-24115130IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-24130151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MTRTCQLDFV PIGPSHANAD AMHAKVRSDK ISCAAYKITQ VDAQVWLRAE QNKSRLDSLL  60
AARLARRLAR SADQPPASQF VRKQIKSFAT GAMVRGKTVM KKIENITSRQ VTFSKRRTGL  120
FNKAKELAVL CDAQVGVLVF SSTGRLYDYS STSGSFNSGN DDYKADDELL SMVRDEPTLM  180
RVRRTVIAIS VLAAIAHVQS RDH
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398