PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00670.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SRS

Protein Properties

Length: 323aa MW: 32949.5 Da PI: 8.6578

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00670.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221	2.5e-68	93	243	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelksk 81 g++sCqdCGnqakkdCah+RCRtCCksrgf+C thvkstWvpaakrrerqqqlaa ++ aaa++a a + r+ +++ + Zmw_sc00670.1.g00220.1.sm.mkhc 93 GGGVSCQDCGNQAKKDCAHQRCRTCCKSRGFSCPTHVKSTWVPAAKRRERQQQLAAFAAPAAATTAGAGPSRDVSKRPR 171 5789***************************************************9999999999999999888999 PP DUF702 82 kqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ ++++ ++ss+++++ + ++++P+evsseavfrcvr++ vd++e+e+aYqt+vsigGhvfkGiL+d G++ Zmw_sc00670.1.g00220.1.sm.mkhc 172 ARLTVATPTTSSGDPQMVTVAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTTVSIGGHVFKGILHDVGPH 243 9999****************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-64	95	243	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.6E-27	97	139	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.9E-23	194	242	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAGFPLGGGG HHSRDDPAPS VPPVHPSDAA SFLYAARAGS SGLQLWQQHE QQHPFYASNI 60 IRFSSDDPPG ASPSLAGAAA SSSSSRGTRG TGGGGVSCQD CGNQAKKDCA HQRCRTCCKS 120 RGFSCPTHVK STWVPAAKRR ERQQQLAAFA APAAATTAGA GPSRDVSKRP RARLTVATPT 180 TSSGDPQMVT VAERFPREVS SEAVFRCVRL GPVDQAEAEV AYQTTVSIGG HVFKGILHDV 240 GPHCLASAGG SGAAIEYHHF RHAGDGSPPS TAPAGEAGGG GGGGGGAGNI IPSSAVVMDP 300 YPTPGPYGTF PGGPPFFHGH PRQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021308557.1	1e-139	protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A2T7EV23	1e-138	A0A2T7EV23_9POAL; Uncharacterized protein
STRING	GRMZM2G080295_P01	1e-135	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124