PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00684.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 358aa MW: 39628.1 Da PI: 6.0364

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00684.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.6	1.4e-13	61	103	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +rWT +E ++l+++++++ + W+ Ia+++g +++ qc+++++ Zmw_sc00684.1.g00070.1.sm.mkhc 61 DRWTDQETLRLLEGIEKFNDN-WNNIAEHVG-TKSKAQCIHHYLR 103 69**************977.*****.*********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	22.287	58	109	IPR017884	SANT domain
SMART	SM00717	9.5E-12	59	107	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-8	60	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.27E-13	60	115	IPR009057	Homeodomain-like
CDD	cd00167	1.48E-10	62	104	No hit	No description
Pfam	PF00249	9.0E-13	62	104	IPR001005	SANT/Myb domain
Pfam	PF16495	7.7E-13	189	244	IPR032451	SMARCC, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MFTASIGFST ANLFCFPLLM EQADIALCSD CFHEARFVIG HSSLDFQRVD AENEGSNTDS 60 DRWTDQETLR LLEGIEKFND NWNNIAEHVG TKSKAQCIHH YLRLPVEDSW LENIEVPEAP 120 TLSRMENNGF LHSDSNGSMS GRIPQDDQSE NQIPFIDSAN PVMSLVAFVT SAVGPRVAAS 180 CARCVQKALI LWVMQLVLIT LKRLELKLKQ FAEIETMLLK ESERFEMMRQ QLATQRARLL 240 SAQFTSSGVT LPGGSNIMVS NPMSQATSPR PPVAPGSMPQ TSMPGMYTNN MQGHQMALLQ 300 QRQQMLSFGP RLPLSAINPG SSSSTPNMMF NHAMPNSALP NNQHPMFRPP SGNNPNAG

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MFTASIGFST ANLFCFPLLM EQADIALCSD CFHEARFVIG HSSLDFQRVD AENEGSNTDS  60
DRWTDQETLR LLEGIEKFND NWNNIAEHVG TKSKAQCIHH YLRLPVEDSW LENIEVPEAP  120
TLSRMENNGF LHSDSNGSMS GRIPQDDQSE NQIPFIDSAN PVMSLVAFVT SAVGPRVAAS  180
CARCVQKALI LWVMQLVLIT LKRLELKLKQ FAEIETMLLK ESERFEMMRQ QLATQRARLL  240
SAQFTSSGVT LPGGSNIMVS NPMSQATSPR PPVAPGSMPQ TSMPGMYTNN MQGHQMALLQ  300
QRQQMLSFGP RLPLSAINPG SSSSTPNMMF NHAMPNSALP NNQHPMFRPP SGNNPNAG

Functional Description ? help Back to Top
Source	Description
UniProt	Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269\|PubMed:14682613, ECO:0000269\|PubMed:16055636}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304302.1	1e-148	uncharacterized protein LOC100216783
Swissprot	Q9XI07	9e-55	SWI3C_ARATH; SWI/SNF complex subunit SWI3C
TrEMBL	A0A1D6MYR2	1e-147	A0A1D6MYR2_MAIZE; Switch/sucrose nonfermenting 3C
TrEMBL	A0A3L6FM52	1e-147	A0A3L6FM52_MAIZE; SWI/SNF complex subunit SWI3C
TrEMBL	C0PKZ5	1e-148	C0PKZ5_MAIZE; Switch/sucrose nonfermenting 3C
STRING	GRMZM2G340756_P03	1e-147	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2692	4	7

Publications ? help Back to Top
Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time. Nucleic Acids Res., 2002. 30(15): p. 3412-21 [PMID:12140326] Zhou C,Miki B,Wu K CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis. Plant Mol. Biol., 2003. 52(6): p. 1125-34 [PMID:14682613] Sarnowski TJ, et al. SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development. Plant Cell, 2005. 17(9): p. 2454-72 [PMID:16055636] Archacki R, et al. Genetic analysis of functional redundancy of BRM ATPase and ATSWI3C subunits of Arabidopsis SWI/SNF chromatin remodelling complexes. Planta, 2009. 229(6): p. 1281-92 [PMID:19301030] Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518] Liu ZW, et al. Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis. PLoS Genet., 2016. 12(5): p. e1006026 [PMID:27171427]