PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00689.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 261aa MW: 28148.5 Da PI: 10.5191

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00689.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.1	3.1e-32	183	241	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Zmw_sc00689.1.g00080.1.am.mk 183 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 241 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-33	168	241	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-28	175	242	IPR003657	WRKY domain
PROSITE profile	PS50811	29.356	178	243	IPR003657	WRKY domain
SMART	SM00774	9.8E-37	183	242	IPR003657	WRKY domain
Pfam	PF03106	4.3E-25	184	240	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1901141	Biological Process	regulation of lignin biosynthetic process
GO:1904369	Biological Process	positive regulation of sclerenchyma cell differentiation
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MFPSPGSRAV MAPGHGTQLS STAAMAAAFS STPTMTFAFQ PAPPTSDLSH HHGVLGYGSA 60 LVLDCPTTTG GASSSSSHAP SSTIPSSNLH HLHAAAAAHV SLPTRSSPPH PWPSDERNQD 120 KRREKGAALA AGKRSGRGLQ QGAARGVGST VRMKKAGGGG GKARRQVREP RFCFKTMSDV 180 DVLDDGYKWR KYGQKVVKNT QHPRSYYRCT QDNCRVKKRV ERLAEDPRMV ITTYEGRHVH 240 SPSRDDEDDA ARASAEMSFL W

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	174	240	8	74	Probable WRKY transcription factor 4
2lex_A	6e-26	174	240	8	74	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818604.1	1e-95	probable WRKY transcription factor 13
TrEMBL	A0A3L6SQQ7	2e-97	A0A3L6SQQ7_PANMI; Putative WRKY transcription factor 12
STRING	GRMZM2G151444_P01	1e-93	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1138	38	130