PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00689.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 229aa MW: 24151.9 Da PI: 9.0074

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00689.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.3e-05	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F ++ + H++ H Zmw_sc00689.1.g00090.1.am.mk 123 FICSYCGKKFCSPQAFGGHQNAH 145 89**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.81E-5	122	150	No hit	No description
PROSITE profile	PS50157	10.471	123	150	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	125	145	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MTEKAAGRPS RVVSLAEITS GSSSYKPPAW PAWLPASRDD MQIQSAGSNA RLSNHCTTWT 60 TTPADKPGKP GGSAGAALGA AEKLYPAGRR ASMDPDGAGR DLDLNLSLQP SSPAPEPEPP 120 GYFICSYCGK KFCSPQAFGG HQNAHKLERC LTKRARELAA ARARQDGQER DGAADEQASR 180 SRRGKEPVAI AASSTGSAAS LPSHQIRVPP EATSRRDSIA EDMDLSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020396330.1	5e-36	zinc finger protein 4
TrEMBL	A0A1D6I4T6	1e-34	A0A1D6I4T6_MAIZE; Uncharacterized protein
STRING	GRMZM2G108818_P01	3e-35	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274