PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00693.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 424aa MW: 45786.4 Da PI: 7.7157

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00693.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	64.5	2.6e-20	53	102	1	50
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll+ Zmw_sc00693.1.g00100.1.am.mk 53 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQVRT 102 7********************************************98654 PP
2	DUF260	50.1	8e-16	132	186	46	100
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lpe+ r da+ss+vyeAear+rdPvyG++g++ +lq+q ++lk++la++++ Zmw_sc00693.1.g00100.1.am.mk 132 SQDLPESSRADAVSSMVYEAEARLRDPVYGCAGTVCRLQKQANELKVQLARAQAD 186 6899**********************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.731	52	187	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.1E-20	53	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-14	132	184	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MDYSNASTGT TAEHSYRSES PPSLVSTSCS PPPPPLPAAQ LIGNVAPTVV MSPCAACKIL 60 RRRCADGCVL APYFPPTEPA KFTTAHRVFG ASNIIKLLQV RTVQSQASRA ARGHHNTYTH 120 GNVLTGAFVP ASQDLPESSR ADAVSSMVYE AEARLRDPVY GCAGTVCRLQ KQANELKVQL 180 ARAQADLLNA QAQHANLLAL VCVEVANRRD SQRQQQQPSP PLMEYGGSRS EVGDAGYQMF 240 YDDSDLLDSA TWPLEPDRAG CQAHRCVHHT GHAHSAKKTE DELTRRDARA SDARCHGSSS 300 SAKEGAASQR RKSIVTISLV RLLFDHGYLE IAYGSVSDSY EVADGVSLES RRMNPKHPWI 360 HMPTVQGEGV WRPDELLPIF WKPGTVTAMA SSVGRGVAST EQTEGSLRCA ARTVVPGDAT 420 LKSE

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MDYSNASTGT TAEHSYRSES PPSLVSTSCS PPPPPLPAAQ LIGNVAPTVV MSPCAACKIL  60
RRRCADGCVL APYFPPTEPA KFTTAHRVFG ASNIIKLLQV RTVQSQASRA ARGHHNTYTH  120
GNVLTGAFVP ASQDLPESSR ADAVSSMVYE AEARLRDPVY GCAGTVCRLQ KQANELKVQL  180
ARAQADLLNA QAQHANLLAL VCVEVANRRD SQRQQQQPSP PLMEYGGSRS EVGDAGYQMF  240
YDDSDLLDSA TWPLEPDRAG CQAHRCVHHT GHAHSAKKTE DELTRRDARA SDARCHGSSS  300
SAKEGAASQR RKSIVTISLV RLLFDHGYLE IAYGSVSDSY EVADGVSLES RRMNPKHPWI  360
HMPTVQGEGV WRPDELLPIF WKPGTVTAMA SSVGRGVAST EQTEGSLRCA ARTVVPGDAT  420
LKSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-32	52	188	10	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-32	52	188	10	112	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004987050.2	5e-95	LOB domain-containing protein 1
TrEMBL	A0A368SSE3	1e-93	A0A368SSE3_SETIT; Uncharacterized protein
TrEMBL	K4AEH3	8e-94	K4AEH3_SETIT; Uncharacterized protein
STRING	Pavir.Ib01336.1.p	1e-100	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90