PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00696.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 153aa MW: 16547.9 Da PI: 10.7272

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00696.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	37	59	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F + L H +H Zmw_sc00696.1.g00030.1.sm.mk 37 FQCRTCGRRFATFQALGGHRTSH 59 89**********99998888777 PP
2	zf-C2H2	15.7	4.2e-05	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F++ L H+r+H Zmw_sc00696.1.g00030.1.sm.mk 90 HRCTTCGAVFPTGQALGGHMRRH 112 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.5E-9	36	60	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.47E-8	37	112	No hit	No description
SMART	SM00355	0.19	37	59	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	37	64	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	39	59	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.5E-13	89	114	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.245	90	112	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.011	90	112	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MTNLLHFLSL SLSPASKVIV KRDRGTRRTR LQDDGAFQCR TCGRRFATFQ ALGGHRTSHN 60 RPRVRANGLD LLLGASRPAG KGAAGKDAVH RCTTCGAVFP TGQALGGHMR RHKAAFDAAA 120 VEIMTSSGLS EEDGERDDAE DLLILPKTLI HFI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980041.1	1e-49	zinc finger protein ZAT12
TrEMBL	A0A368SBJ9	3e-48	A0A368SBJ9_SETIT; Uncharacterized protein
STRING	Si027432m	5e-49	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6730	26	50