PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00700.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 508aa MW: 55859.7 Da PI: 8.7335

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00700.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.5	9.7e-48	151	315	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................................ 49 +ppGfrFhPtdeel+ +yLkkk+ +k++l evi+evd++k+ePw+L+ Zmw_sc00700.1.g00080.1.am.mk 151 VPPGFRFHPTDEELLLYYLKKKIGFEKFDL-EVIREVDLNKIEPWELQVrlvhartlfrslvvggdassswctdwrgrsme 230 69**************************.99**********95589********************99988 PP NAM 50 .....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmh 124 ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mh Zmw_sc00700.1.g00080.1.am.mk 231 haercRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT-SYSKIGMRKTLVFYRGRAPHGQKTDWIMH 310 8776633333567*********************************9.8889********************* PP NAM 125 eyrle 129 eyrle Zmw_sc00700.1.g00080.1.am.mk 311 EYRLE 315 *85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-16	142	199	IPR003441	NAC domain
PROSITE profile	PS51005	51.969	151	335	IPR003441	NAC domain
Pfam	PF02365	2.6E-26	152	314	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-35	242	335	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MRRGIIVKVE QDRYVLVSRD PRAARFSSFG PVAVCSSRRC AATYNAAGSM HGACTAGVAG 60 MAGRPAQLAA RERQRSHGDV GDLTEFPALA LMAVPCVLRD QAGFIPVRRR QLFPVFTTVQ 120 LLGWPTQLLD WFSWGRGGVL TMAAFSSSNG VPPGFRFHPT DEELLLYYLK KKIGFEKFDL 180 EVIREVDLNK IEPWELQVRL VHARTLFRSL VVGGDASSSW CTDWRGRSME HAERCRIGSA 240 PQNEWYFFSH KDRKYPTGSR TNRATTAGFW KATGRDKCIR TSYSKIGMRK TLVFYRGRAP 300 HGQKTDWIMH EYRLEEADDA QGGTDGWVVC RVFKKKCFFK IGAGGEGSTR QGADAGDHLA 360 VSPPLGSHTH QGALASHYMH PHHQYYHAAS SSYYSQMQVP AAYTHQVQVQ DLLTNHRPTA 420 DAGYDDFSGL PVDHPAAGGL NVGSSDGVAA TDGGQLGEGS RDEASGAAEQ QWQAIDGFDS 480 GAGSAAVEQM TVRAGQRGGE MDLWGYGR

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MRRGIIVKVE QDRYVLVSRD PRAARFSSFG PVAVCSSRRC AATYNAAGSM HGACTAGVAG  60
MAGRPAQLAA RERQRSHGDV GDLTEFPALA LMAVPCVLRD QAGFIPVRRR QLFPVFTTVQ  120
LLGWPTQLLD WFSWGRGGVL TMAAFSSSNG VPPGFRFHPT DEELLLYYLK KKIGFEKFDL  180
EVIREVDLNK IEPWELQVRL VHARTLFRSL VVGGDASSSW CTDWRGRSME HAERCRIGSA  240
PQNEWYFFSH KDRKYPTGSR TNRATTAGFW KATGRDKCIR TSYSKIGMRK TLVFYRGRAP  300
HGQKTDWIMH EYRLEEADDA QGGTDGWVVC RVFKKKCFFK IGAGGEGSTR QGADAGDHLA  360
VSPPLGSHTH QGALASHYMH PHHQYYHAAS SSYYSQMQVP AAYTHQVQVQ DLLTNHRPTA  420
DAGYDDFSGL PVDHPAAGGL NVGSSDGVAA TDGGQLGEGS RDEASGAAEQ QWQAIDGFDS  480
GAGSAAVEQM TVRAGQRGGE MDLWGYGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	151	336	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	151	336	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	151	336	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	151	336	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-45	151	336	20	169	NAC domain-containing protein 19
3swm_B	2e-45	151	336	20	169	NAC domain-containing protein 19
3swm_C	2e-45	151	336	20	169	NAC domain-containing protein 19
3swm_D	2e-45	151	336	20	169	NAC domain-containing protein 19
3swp_A	2e-45	151	336	20	169	NAC domain-containing protein 19
3swp_B	2e-45	151	336	20	169	NAC domain-containing protein 19
3swp_C	2e-45	151	336	20	169	NAC domain-containing protein 19
3swp_D	2e-45	151	336	20	169	NAC domain-containing protein 19
4dul_A	2e-45	151	336	17	166	NAC domain-containing protein 19
4dul_B	2e-45	151	336	17	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824150.1	0.0	protein BEARSKIN1-like
Swissprot	Q9SV87	1e-98	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A3L6QA67	0.0	A0A3L6QA67_PANMI; Protein BEARSKIN1-like
STRING	Pavir.Gb01599.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9297	30	46

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]