PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00716.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 85aa MW: 9855.59 Da PI: 10.703

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00716.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.6	1.8e-19	9	42	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 +ri+n +nrqvtfskRr g++KKA EL +LCda+ Zmw_sc00716.1.g00200.1.sm.mkhc 9 ERIDNRTNRQVTFSKRRSGLMKKARELGILCDAD 42 69******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.44E-19	1	45	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-19	1	56	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.591	1	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.5E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-17	10	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.5E-16	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MGRGKIAIER IDNRTNRQVT FSKRRSGLMK KARELGILCD ADEQLLADEI IQLNQKGLAL 60 QKENIELKKE VSIAHRHKME LQKKM

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682317.1	1e-20	MADS-box transcription factor 25 isoform X2
Swissprot	Q84NC5	1e-18	MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBL	A0A4P1QZH4	1e-20	A0A4P1QZH4_LUPAN; Uncharacterized protein
STRING	Pavir.Ea01057.1.p	5e-21	(Panicum virgatum)
STRING	Si003917m	3e-21	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34155	3	4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876]