PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00720.1.g00270.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 300aa    MW: 31313.5 Da    PI: 9.167
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00720.1.g00270.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.6e-08100125227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     kt+ C  +     Ck+G +C+FaHg+
  Zmw_sc00720.1.g00270.1.sm.mkhc 100 KTRMCTKYNTAEGCKFGTKCHFAHGE 125
                                     9***********************96 PP
2zf-CCCH40.54.4e-13267292127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     ykt+lC +f++ GtC +GdrC+FaHg+
  Zmw_sc00720.1.g00270.1.sm.mkhc 267 YKTKLCENFLK-GTCTFGDRCHFAHGE 292
                                     9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.5963260IPR000571Zinc finger, CCCH-type
SMARTSM003564.13259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-53357IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-63457IPR000571Zinc finger, CCCH-type
PfamPF146080.484057No hitNo description
Gene3DG3DSA:4.10.1000.107.7E-1397130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-898129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.23598126IPR000571Zinc finger, CCCH-type
SMARTSM003560.07298125IPR000571Zinc finger, CCCH-type
PfamPF146080.19104124No hitNo description
SuperFamilySSF547916.84E-14162237IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.5E-14165235IPR004088K Homology domain, type 1
SMARTSM003222.8E-10166236IPR004087K Homology domain
PROSITE profilePS5008414.739167231IPR004088K Homology domain, type 1
PfamPF000136.6E-11169231IPR004088K Homology domain, type 1
SuperFamilySSF902291.7E-9265296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-15265296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.967266293IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-9266292IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10267292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MYGAAEAVVW CVLAAKQTRP SVDKESFQTG LSSKSKPCTK FFSTIGCPFG EGCHFSHFVP  60
GGYPAVAKML NLGSPAVSAP TRVPVDLAAV ANSHPASTSK TRMCTKYNTA EGCKFGTKCH  120
FAHGERELGK PAYMSREDPP MGGRFGGRPD PHLQATMGPP AGNFGATATA KISVDASLAG  180
GIIGKGGANT KHISRVTGVK LSIRDHESDP NLKNIELEGN FDQIKQASDM VGELIMTISA  240
SMPTKNPSGA TALAGRGGGG SGGRSNYKTK LCENFLKGTC TFGDRCHFAH GESEQRGGPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447282.11e-161zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-137C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLC5Y9Z91e-159C5Y9Z9_SORBI; Uncharacterized protein
STRINGSb06g032000.11e-160(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]