PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00722.1.g00320.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 395aa    MW: 41508.2 Da    PI: 8.84
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00722.1.g00320.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.4e-33204261259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  Zmw_sc00722.1.g00320.1.am.mk 204 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQRCPVKKRVERSYQDPAVVITTYEGKHTHP 261
                                   8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-35188263IPR003657WRKY domain
SuperFamilySSF1182902.22E-29195263IPR003657WRKY domain
PROSITE profilePS5081132.191198263IPR003657WRKY domain
SMARTSM007746.1E-39203262IPR003657WRKY domain
PfamPF031062.4E-26204261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSSSGEFYFH DELASLFAQQ QQRPAPAGDM MQQQQRPAST WFADFLQAGT PTAADYDDLL  60
LCRALDLPVS AAADDVVKRE LVVDTGGGGA RTPSGGGTAP VTPNTTSSMS SSSSEAARGA  120
GGGGRGLGGG GGFGAGEEDS PAGRCKKEEG DGEEIKSGKG DQEDGDKSKK GAGSAAKAKG  180
NKGEKRQRQP RFAFMTKSEV ENLEDGYRWR KYGQKAVKNS PYPRSYYRCT TQRCPVKKRV  240
ERSYQDPAVV ITTYEGKHTH PIPATLRGST HLLAAHGLHH HLSALAPPPM PHAMGAAAPT  300
FGRAGGGGID VLGLLQPRGG ASSHHAMLPT TMSQTSLTRG PVSSSVTMSA TTTTPSSSPP  360
SLQMQHFMAQ DFGLLQDMMM PSSFVHTNGS GNIQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27194264878Probable WRKY transcription factor 4
2lex_A2e-27194264878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122130GGRGLGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169830.11e-128uncharacterized protein LOC100383722
TrEMBLC0PIJ71e-126C0PIJ7_MAIZE; Putative WRKY transcription factor 71
STRINGGRMZM2G151763_P011e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173