PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00729.1.g00210.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 200aa    MW: 21735.7 Da    PI: 9.2623
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00729.1.g00210.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.82.5e-222466244
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                                  +i nk  rqvtfskRr+g++KKA+ELS LC+a+vav++fs++ 
  Zmw_sc00729.1.g00210.1.am.mk 24 FIANKNSRQVTFSKRRKGLFKKASELSQLCGARVAVVVFSENS 66
                                  799*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-271574IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.7451575IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-251689IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-171737IPR002100Transcription factor, MADS-box
PfamPF003193.3E-242469IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-173752IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-175273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAAAMESPRS RKLSQGKQRI QIRFIANKNS RQVTFSKRRK GLFKKASELS QLCGARVAVV  60
VFSENSKPFA VGAPSVDDVL RAYAPLPAED EDAALASCLA WLLDEDDAAG RGGVEAALRQ  120
AEETAALVAA EQARMDAIGK KVMQAKADGR SWWEADVEQL GEAELPEFAR ALRRLRDNVQ  180
RHADQLSSAA AQPPPPMPPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811768.12e-66agamous-like MADS-box protein AGL62
TrEMBLA0A2S3HIR95e-65A0A2S3HIR9_9POAL; Uncharacterized protein
TrEMBLA0A2T7DXP15e-65A0A2T7DXP1_9POAL; Uncharacterized protein
STRINGPavir.J16245.1.p2e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088