PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00731.1.g00300.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 209aa MW: 22438.9 Da PI: 8.5821

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00731.1.g00300.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.5	5.9e-41	36	112	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC dl+ akeyhr+h+vCe+h+k+p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ Zmw_sc00731.1.g00300.1.sm.mkhc 36 CQVEGCGLDLTGAKEYHRKHRVCEAHTKCPRVVVAGHERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQP 112 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.2E-33	29	97	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.24	33	110	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-39	34	115	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.7E-31	36	109	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MPASGSSGEA PARRGGRERE GKRAKGEDGG AGEVKCQVEG CGLDLTGAKE YHRKHRVCEA 60 HTKCPRVVVA GHERRFCQQC SRFHALSEFD QKKRSCRRRL SDHNARRRKP QPDAFAFASA 120 RLPSSLFGPD TSITASKFDG APDLQHALSL LSAGSCGFPD PVQQASCLIQ FSGTSENSGD 180 LHSSHGGSSA LVSCADEQHT APQSQLSYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-27	26	109	1	84	squamosa promoter binding protein-like 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	108	KKRSCRRRLSDHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015688371.1	1e-82	PREDICTED: squamosa promoter-binding-like protein 4 isoform X2
Swissprot	Q6H509	2e-53	SPL4_ORYSJ; Squamosa promoter-binding-like protein 4
TrEMBL	C4JBI6	2e-74	C4JBI6_MAIZE; Squamosa promoter-binding-like protein 2
STRING	GRMZM2G163813_P02	3e-75	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6271	29	52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]