PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00748.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 395aa    MW: 42367.3 Da    PI: 6.5943
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00748.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.6e-07111132426
                                   ---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                   + C++f++ G C +Gd+C FaHg
  Zmw_sc00748.1.g00170.1.sm.mk 111 AACPDFRK-GGCMRGDNCEFAHG 132
                                   78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.1E-5106136IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5107133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009108134IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5111132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5113134IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258142166IPR000571Zinc finger, CCCH-type
SMARTSM0035612142165IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MMMMGEGAAH APPWQHGPAS GGGEGDDAHT LLAALRRYLP SNDSAERDED GEEEAAIAAL  60
DAYACDEFRM YEFKVRRCAR GRSHDWTDCP FAHPGEKARR RDPRRYHYSG AACPDFRKGG  120
CMRGDNCEFA HGVFECWLHP TRYRTQPCKD GTACRRRVCF FAHTPDQLRV LPAQQQQQTA  180
SPRGVTAAAA SGPLAESYDG SLLRRQAFES YLTKSMMSSS PTSTLVSPPR SPPSESPPVS  240
PDAAAALRRG SWPGVGSPVN DVVASLRQLR LASSSPRSAP SGAPFLAGYP SGAFGSPKST  300
GLYSLPSTPT GPSPVTITTP SGATVMTIDR LNLGLLEEAE PVMERVESGR ALREKVFERL  360
SKEATVPNDT TAVATDDGVP AGSAPDVAWV TDLVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960911.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N41e-173C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0A9E0J00.0A0A0A9E0J0_ARUDO; Uncharacterized protein
STRINGSi024826m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]