PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00749.1.g00220.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 397aa    MW: 43439.1 Da    PI: 8.0944
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00749.1.g00220.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-093203552055
                                   HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Zmw_sc00749.1.g00220.1.sm.mk 320 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 355
                                   4679*****************************885 PP
2ELK37.64.6e-13275296122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK qLl+KYsgyL+sL+qEFs
  Zmw_sc00749.1.g00220.1.sm.mk 275 ELKYQLLKKYSGYLSSLRQEFS 296
                                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.1E-2283127IPR005540KNOX1
PfamPF037909.7E-2284125IPR005540KNOX1
SMARTSM012562.0E-30130181IPR005541KNOX2
PfamPF037913.0E-24136179IPR005541KNOX2
PfamPF037894.9E-10275296IPR005539ELK domain
PROSITE profilePS5121311.627275295IPR005539ELK domain
SMARTSM011881.2E-7275296IPR005539ELK domain
PROSITE profilePS5007112.892295358IPR001356Homeobox domain
SuperFamilySSF466891.37E-19296370IPR009057Homeodomain-like
SMARTSM003894.4E-13297362IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.3E-28300359IPR009057Homeodomain-like
CDDcd000862.25E-12307359No hitNo description
PfamPF059201.2E-16315354IPR008422Homeobox KN domain
PROSITE patternPS000270333356IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEQSFGNLGA GRSSSGGGGS NSKPAASSSF LQLPLSSAAA APAGVAYYGA PLALLHQGQA  60
AGPSSSSQSQ YGRHAEISPA EADAIKAKIV AHPQYSALLA AYLDCQKVGA PPDVLEKLTA  120
VAGKLDARPP NRHEPRDPEL DQFMEAYCNM LVKYREELTR PIDEAMEFLK RVEAQLDSIS  180
GGAAAAGSSR LSLAGKTLLQ LRPSLASPSS LVAETEITHL HWKCSVARVF RGALPGFLNA  240
GHGKSEGVGS SEDDMDTTGR ENETSEIDPR AEDKELKYQL LKKYSGYLSS LRQEFSKKKK  300
KGKLPKEARQ KLLHWWELHY KWPYPSETEK IALAESTGLD QKQINNWFIN QRKRHWKPSE  360
DMPFVMMEGF HPQTAAALYM DGPFLADGMY RLGSRME
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955415.10.0homeobox protein rough sheath 1
SwissprotO650341e-161KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-161KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A368PV500.0A0A368PV50_SETIT; Uncharacterized protein
STRINGPavir.Bb00225.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]