PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00754.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 608aa MW: 64940.6 Da PI: 10.7636

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00754.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.4	9.1e-07	198	215	40	57
-HHHHHHHHHHHHHHHHC CS Homeobox 40 terqVkvWFqNrRakekk 57 +++V++WFqNrR + ++ Zmw_sc00754.1.g00270.1.am.mk 198 GDANVFYWFQNRRSRSRR 215 579************997 PP
2	Wus_type_Homeobox	40.6	6.1e-14	191	217	39	65
Wus_type_Homeobox 39 LeeyGkiedkNVfyWFQNrkaRerqkq 65 +++G+++d+NVfyWFQNr++R+r++q Zmw_sc00754.1.g00270.1.am.mk 191 VSRFGAVGDANVFYWFQNRRSRSRRRQ 217 689**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.94E-6	187	222	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.9E-5	188	223	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
MIGLAKAEQV ARGVAARDGL SGRCRSVFSP FHSRRAEIHL SPDVMAPAAV CYTLDRPAIR 60 VPADIASCSG EDTEASRRAT FRCRGRWLGK AAMAGAVCTG RVRRCSQDHP SGPLRSGSDR 120 RPVGRLCSPS SLYHHMHLDA LLVLPRSRLN LHCTAPREQL HLHSKLSKEC PVQTQLVAGC 180 IPSADAKHGT VSRFGAVGDA NVFYWFQNRR SRSRRRQRQL QAQAQAAAAS TAAASSSSSG 240 SPPTSGGGGL APGHAGSVAS SLGTYPHGAA HGSSASASWP PSPPPSTGMI GDLDCGGSDD 300 LFAISRQMGY VDGGGSGSSS SAAAKQQQQQ LYXXXXTARL TARRRPRRGR PRLRRSDDLF 360 AISRQMGYVD GGGSGSSSSA AAKQQQQQLY YSCQPASITV FINGVATEVP RGPIDLRSMF 420 GQDVMLVHST GGIVPVNEYG ILMQSLEMGE SYFLVTEAGL TGAAMAGMPF HAGLHGYTKG 480 GPGKHEEMRP VPLPWGATPR RHRCCAPPQV PKCPALPQRS PRRRTPPDLP LSPTFASPSS 540 LCRDNPSSGL PQTRCSIPVL IREGSNRDGG LGRRYRQPLV AMDRRPAQPK QPHLSMLDCL 600 AQPWSRSR

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

MIGLAKAEQV ARGVAARDGL SGRCRSVFSP FHSRRAEIHL SPDVMAPAAV CYTLDRPAIR  60
VPADIASCSG EDTEASRRAT FRCRGRWLGK AAMAGAVCTG RVRRCSQDHP SGPLRSGSDR  120
RPVGRLCSPS SLYHHMHLDA LLVLPRSRLN LHCTAPREQL HLHSKLSKEC PVQTQLVAGC  180
IPSADAKHGT VSRFGAVGDA NVFYWFQNRR SRSRRRQRQL QAQAQAAAAS TAAASSSSSG  240
SPPTSGGGGL APGHAGSVAS SLGTYPHGAA HGSSASASWP PSPPPSTGMI GDLDCGGSDD  300
LFAISRQMGY VDGGGSGSSS SAAAKQQQQQ LYXXXXTARL TARRRPRRGR PRLRRSDDLF  360
AISRQMGYVD GGGSGSSSSA AAKQQQQQLY YSCQPASITV FINGVATEVP RGPIDLRSMF  420
GQDVMLVHST GGIVPVNEYG ILMQSLEMGE SYFLVTEAGL TGAAMAGMPF HAGLHGYTKG  480
GPGKHEEMRP VPLPWGATPR RHRCCAPPQV PKCPALPQRS PRRRTPPDLP LSPTFASPSS  540
LCRDNPSSGL PQTRCSIPVL IREGSNRDGG LGRRYRQPLV AMDRRPAQPK QPHLSMLDCL  600
AQPWSRSR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109