PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00758.1.g00280.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 237aa    MW: 26677.5 Da    PI: 10.5279
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00758.1.g00280.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.1e-15453148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                                  r+rW +eEd  l  +v+q+G++ W++++++m+  + R +k+c +rw +yl
  Zmw_sc00758.1.g00280.1.am.mk  4 RQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNvaLDRDAKSCHERWKNYL 53
                                  89**********************************************97 PP
2Myb_DNA-binding37.36.4e-1259103147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k +  +w  +
  Zmw_sc00758.1.g00280.1.am.mk  59 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103
                                   6788******************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.123153IPR017930Myb domain
SMARTSM007179.9E-12355IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-21498IPR009057Homeodomain-like
CDDcd001671.90E-9653No hitNo description
Gene3DG3DSA:1.10.10.601.4E-20660IPR009057Homeodomain-like
PfamPF139211.1E-13767No hitNo description
PROSITE profilePS5129423.37554108IPR017930Myb domain
SMARTSM007172.8E-1058106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1561102IPR009057Homeodomain-like
CDDcd001671.08E-863104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKERQRWRPE EDAVLRAYVR QYGPREWHLV SQRMNVALDR DAKSCHERWK NYLRPGIKKG  60
SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE LRGSRRPPPE  120
PSPDERGRYE WLLENFAEKL VNERLQPTPL LMAAPVLPPW LSSSATGHTV VTQPPSPSVT  180
LSLASATTPP ATVPPWMPAE RGAAADAFGF TTPQPPPAGA PTPQPGVAVV EGQALAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-157100797MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-157100797C-Myb DNA-Binding Domain
1msf_C1e-157100797C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805303.11e-102protein rough sheath 2
SwissprotQ9S7B21e-100RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A317YB851e-102A0A317YB85_MAIZE; Protein rough sheath 2
STRINGTraes_5BS_E635B0A281.21e-101(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654