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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc00768.1.g00040.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 237aa MW: 25360.9 Da PI: 7.7927 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 97.9 | 4.3e-31 | 135 | 185 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a++ifss+g+lyeys+
Zmw_sc00768.1.g00040.1.am.mk 135 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALVIFSSRGRLYEYSN 185
79***********************************************95 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 1.2E-34 | 128 | 186 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.4E-28 | 129 | 149 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.69E-38 | 130 | 187 | No hit | No description |
| PROSITE profile | PS50066 | 29.058 | 133 | 187 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.14E-26 | 133 | 188 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.4E-26 | 136 | 183 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.4E-28 | 149 | 164 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.4E-28 | 164 | 185 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 237 aa Download sequence Send to blast |
MAGSSFSAAE AATEGPLKLP TGTPPSPRNN PSSSLDLSPF PVLFAHKPNM HIQEVQAAPS 60 TDLMVIALLA LMLDSFDLHP CFSSQEIESA LTSVGLNLKD PMSSSPGSGS VGGASAAAAA 120 AAAENKAAGK GKQIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEIA LVIFSSRGRL 180 YEYSNNSPEL FLCVTDACDW FGLGSPLLFL PRYVLSLACI VREEREGDRR REKGRPS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1egw_A | 2e-17 | 130 | 185 | 3 | 58 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_B | 2e-17 | 130 | 185 | 3 | 58 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_C | 2e-17 | 130 | 185 | 3 | 58 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_D | 2e-17 | 130 | 185 | 3 | 58 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1n6j_A | 4e-17 | 130 | 192 | 3 | 65 | Myocyte-specific enhancer factor 2B |
| 1n6j_B | 4e-17 | 130 | 192 | 3 | 65 | Myocyte-specific enhancer factor 2B |
| 1tqe_P | 3e-17 | 130 | 192 | 4 | 66 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 3e-17 | 130 | 192 | 4 | 66 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 3e-17 | 130 | 192 | 4 | 66 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 3e-17 | 130 | 192 | 4 | 66 | Myocyte-specific enhancer factor 2B |
| 3mu6_A | 2e-17 | 130 | 185 | 3 | 58 | Myocyte-specific enhancer factor 2A |
| 3mu6_B | 2e-17 | 130 | 185 | 3 | 58 | Myocyte-specific enhancer factor 2A |
| 3mu6_C | 2e-17 | 130 | 185 | 3 | 58 | Myocyte-specific enhancer factor 2A |
| 3mu6_D | 2e-17 | 130 | 185 | 3 | 58 | Myocyte-specific enhancer factor 2A |
| 6c9l_A | 3e-17 | 130 | 192 | 4 | 66 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 3e-17 | 130 | 192 | 4 | 66 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 3e-17 | 130 | 192 | 4 | 66 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 3e-17 | 130 | 192 | 4 | 66 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 3e-17 | 130 | 192 | 4 | 66 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 3e-17 | 130 | 192 | 4 | 66 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004960599.1 | 5e-44 | MADS-box transcription factor 58 | ||||
| TrEMBL | A0A368QCB7 | 1e-42 | A0A368QCB7_SETIT; Uncharacterized protein | ||||
| STRING | Pavir.Ca00579.1.p | 4e-44 | (Panicum virgatum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP129 | 38 | 398 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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