PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00769.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 241aa MW: 26238.2 Da PI: 7.3624

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00769.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.6	5.7e-10	71	97	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f +G+C y + C+FaHg+ Zmw_sc00769.1.g00180.1.am.mk 71 YKTRLCERFESGGWCAYEEACTFAHGR 97 9************************96 PP
2	zf-CCCH	24	6.8e-08	142	160	8	26
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 f+ GtC+yGd+C++aHg Zmw_sc00769.1.g00180.1.am.mk 142 EFRDKGTCSYGDKCNYAHG 160 57778*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.2E-15	67	103	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-9	69	101	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.742	70	98	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0067	70	97	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.3E-8	71	97	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6E-4	136	161	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-6	137	161	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.0E-7	138	161	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.46	139	162	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-5	140	160	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MENESNATAS GNAGHNSSWE GSSVIVLPAE SAAACPKSQQ QCGATRPQQR EKEQQQQPRA 60 ELVPEPPKVF YKTRLCERFE SGGWCAYEEA CTFAHGRAEL RPPLPLPPTF RRSRPAPPPP 120 ADADDSWRAR FLYVGAGKVC FEFRDKGTCS YGDKCNYAHG TAVQPTDTVY HTGPDPARKS 180 ATSPARAFSP GSSIYAPATS RAFPPGHDVV DGPQGEVKPT PLELLSRKKL SGIYGDWPED 240 F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1E5VJ66	3e-42	A0A1E5VJ66_9POAL; Uncharacterized protein
STRING	Pavir.Ea00381.1.p	9e-41	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13364	20	30