PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00777.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 314aa MW: 33765.7 Da PI: 6.0246

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00777.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.7e-17	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll +++ +G g+W++ ar+ g++Rt+k+c++rw++yl Zmw_sc00777.1.g00020.1.am.mk 18 RGPWTLEEDNLLMSYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 65 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.516	13	69	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-20	16	64	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-13	17	67	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-15	18	65	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.99E-20	19	87	IPR009057	Homeodomain-like
CDD	cd00167	2.04E-11	20	65	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-5	65	88	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MAATMSKQQQ QDEMELRRGP WTLEEDNLLM SYIACHGEGR WNLLARCSGL KRTGKSCRLR 60 WLNYLKPDIK RGNLTPEEQL LILELHSNPV FRDAVRCYWM PRLLEKMAAT TAHHSHMSMD 120 PAAPLLHPAA SIGDMHMASS SPRIHHGCSQ GQPHDAINTP AATSGAGYYH VVDPSPSTST 180 TSGSGSTTAA AALPPVPCFS ELSWFDQQYY GVRPCDDPAG VFDPAGMGNL GLDGLDLGPA 240 DCAYSDSTLL DYLNSTCTGS TTTTTVLGSG AAGYTTDDVD GAYYGGGPTT WRSTDELCQA 300 ARKVGDHHQR GGGI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006643700.1	1e-101	PREDICTED: transcription repressor MYB4-like
TrEMBL	J3KW19	2e-99	J3KW19_ORYBR; Uncharacterized protein
STRING	Pavir.Ea00660.1.p	1e-112	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330