PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00778.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 434aa    MW: 47348.6 Da    PI: 12.3131
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00778.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.1e-30331381151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Zmw_sc00778.1.g00100.1.am.mk 331 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 381
                                   79***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.567323383IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-40323382IPR002100Transcription factor, MADS-box
CDDcd002659.83E-37325381No hitNo description
PROSITE patternPS003500325379IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-30325345IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-27325386IPR002100Transcription factor, MADS-box
PfamPF003191.0E-26332379IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-30345360IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-30360381IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDSPEIGLAF LQYAGRPAGR LKMHWSQRSN GSGRSLHCTG QRGTINGDFA AGAGLEKART  60
APSDDEVRHS CLRVAIRSPL VRTEAGPGRP TGSPPSYAPA GPALSGISTV VHGPTPHLLW  120
ALSAAFRRST KQWTRNRIRV AALHRHRLAQ PPIRSPINPP LLLPRKARNT NPFAAAPGPG  180
ASVFRPPTAT AKGDRTTAAG ALSCPGRFSP RRVNPSRDRL LYLADAMPPA FRLHAAGPRL  240
ASSTRCAAPR PRNGGLRLRV IGSSSISLPA FHRYKIHRAR VYSSFQASGR GSEHQKGNPR  300
RGGGRAACLP ALPFLRRRGS ARMVRGRTEL KRIENATSRQ VTFSKRRNGL LKKAFELSVL  360
CDAEVALIVF SPRGKLYEFA SAARCVSRLV SLPHESADCK SIRTPFRSVP FRTRARRCYL  420
SSLLTLWLFE RSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-15323396178MEF2 CHIMERA
6byy_B2e-15323396178MEF2 CHIMERA
6byy_C2e-15323396178MEF2 CHIMERA
6byy_D2e-15323396178MEF2 CHIMERA
6bz1_A2e-15323396178MEF2 CHIMERA
6bz1_B2e-15323396178MEF2 CHIMERA
6bz1_C2e-15323396178MEF2 CHIMERA
6bz1_D2e-15323396178MEF2 CHIMERA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6555922