PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00780.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 98aa    MW: 11281.5 Da    PI: 11.7718
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00780.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.6e-293181151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krien++ rqvtfskRr g++KKA+ELS+LCdaev +++fs+tg+lye++s
  Zmw_sc00780.1.g00010.1.am.mk 31 KRIENSTSRQVTFSKRRGGLFKKAKELSILCDAEVGLVVFSNTGRLYEFAS 81
                                  79***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.27E-292384IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-402382IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.0432383IPR002100Transcription factor, MADS-box
CDDcd002654.48E-382484No hitNo description
PROSITE patternPS0035002579IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-292545IPR002100Transcription factor, MADS-box
PfamPF003192.2E-273279IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-294560IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-296081IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MRTCLVLIRR EQQVARIWVG KKMGRGKIVI KRIENSTSRQ VTFSKRRGGL FKKAKELSIL  60
CDAEVGLVVF SNTGRLYEFA STRFVWLVPV RLLAKIDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-192382160MEF2C
5f28_B7e-192382160MEF2C
5f28_C7e-192382160MEF2C
5f28_D7e-192382160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019420955.11e-31PREDICTED: MADS-box transcription factor 23-like isoform X2
RefseqXP_025878665.16e-32MADS-box transcription factor 57 isoform X3
SwissprotQ6Z6W25e-32MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A314Z6Q32e-32A0A314Z6Q3_PRUYE; MADS-box protein 12
STRINGGRMZM2G052045_P018e-33(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]