PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00780.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 277aa MW: 30732.7 Da PI: 7.6393

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00780.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.3	1.1e-33	113	203	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................. 65 ++++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+skt++WLl q+kpai+ l +t Zmw_sc00780.1.g00040.1.am.mk 113 PVRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDRLGFDKASKTVNWLLIQSKPAIDSLCDTsmpgapvfgptvvkgkk 193 6899************************************************************44444444444444444 PP TCP 66 ..ssssasec 73 +sss+ c Zmw_sc00780.1.g00040.1.am.mk 194 geGSSSSPGC 203 4333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-31	115	178	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.499	115	173	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MLPHYPGNPP RRHHHHHQCV YQQEQPLIPN PTAAFLMPAT ASWDEYGGQI FPAADMYNQQ 60 ETLEAVLRQA VTAPRQQDHH PAVERELESS RDGAAPAVDD GVAPAAVVPR RRPVRTDRHS 120 KIRTAQGVRD RRMRLSVGVA RDFFALQDRL GFDKASKTVN WLLIQSKPAI DSLCDTSMPG 180 APVFGPTVVK GKKGEGSSSS PGCFKDTRER VRSRGALDPA AAFMEDRGGS VLDWNMSEAA 240 ATAPAAMELT QPMEGLEYYQ YYQLEEMMRC NNGVLPR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973503.2	2e-95	transcription factor TB1
TrEMBL	A0A1E5VGN2	2e-79	A0A1E5VGN2_9POAL; Uncharacterized protein
STRING	Si015230m	2e-76	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4052	31	72