PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00780.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 852aa MW: 92864.6 Da PI: 9.666

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00780.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.1	9.7e-29	588	641	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r+rWt eLH+rFv av++LGG++kAtPk++l++m+v gLtl+h+kS LQkYR+ Zmw_sc00780.1.g00190.1.am.mk 588 QRVRWTRELHRRFVLAVSELGGADKATPKAVLRVMDVRGLTLHHLKSYLQKYRM 641 7****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.58E-14	586	644	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-28	587	645	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-21	588	641	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-5	589	640	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-14	703	740	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence Send to blast
MKHPAAAREV TKGKKSEAWG GKGGDDDAKH HWLLPRPRRG APRRGTSITS PSYGPHGLSM 60 RFLVRGMAGR GGGRGSGGCV RVRVSPVLPV EGRRRSSTLS PNDAVAVPGE GKGGAGAEQS 120 RFTTAGQTHR NSSCGCPYYP GTSPPRFPRF PRPRTHPHPH PHPLSFLMTP LPKTKQSGRQ 180 AQGSDEHAKD ADTTVSVRPS HVNHEMPGTN DCELRDKRRL VISSQNASEA RRGPGYSSAT 240 TRNGNSVGMW RLETESTAVS RLSEVCKGVV APDQSLPPTQ KEDETATYSD GRIRPTIWSL 300 APVTHCPSLA RDATAAAAPA QTHAPTSGDG EGGSLASRAA SDEWRSGLDS LIRLSPQKPG 360 AVCQLRQGAA AAGAGRPLRR RRRPSSLGVR GKRCGGETLR LGTEGIRSKE EEGDEFELYR 420 FRTAERFSPF QVKGVKAKGG NNGGCKRRCM AHWHGPQLPR HRYSLPFPPC RAYPYIYQRR 480 RSRTHSTEEE YICAVESKAT NLLSAQPVSN SQLAAYKTAP RHHRLLGTCF CCCRWSSLQL 540 RPSRRASHAG HAADAATPRD VVLGTLEMSS SGGCYAGQSS GEPAGRPQRV RWTRELHRRF 600 VLAVSELGGA DKATPKAVLR VMDVRGLTLH HLKSYLQKYR MAVSRGLVEV TDDNGEGQND 660 RSSSSENQPD EYDEDTVTEM YRTFANDESE VLCDSSRSVT WIQREVHRNL QEQIEVQRHL 720 QLRIEAQGRY LQSVLRRAEE VLADYSLDLP EAELSELVSA AASTSSSSLS LSPLHYPSTA 780 SCVTSSSSSE AESKASAKRL CACADMRECT VEQPVQSKRG VLQSNRRQQG DADEAEAEAD 840 AENGSSGIDL NR

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence Send to blast

MKHPAAAREV TKGKKSEAWG GKGGDDDAKH HWLLPRPRRG APRRGTSITS PSYGPHGLSM  60
RFLVRGMAGR GGGRGSGGCV RVRVSPVLPV EGRRRSSTLS PNDAVAVPGE GKGGAGAEQS  120
RFTTAGQTHR NSSCGCPYYP GTSPPRFPRF PRPRTHPHPH PHPLSFLMTP LPKTKQSGRQ  180
AQGSDEHAKD ADTTVSVRPS HVNHEMPGTN DCELRDKRRL VISSQNASEA RRGPGYSSAT  240
TRNGNSVGMW RLETESTAVS RLSEVCKGVV APDQSLPPTQ KEDETATYSD GRIRPTIWSL  300
APVTHCPSLA RDATAAAAPA QTHAPTSGDG EGGSLASRAA SDEWRSGLDS LIRLSPQKPG  360
AVCQLRQGAA AAGAGRPLRR RRRPSSLGVR GKRCGGETLR LGTEGIRSKE EEGDEFELYR  420
FRTAERFSPF QVKGVKAKGG NNGGCKRRCM AHWHGPQLPR HRYSLPFPPC RAYPYIYQRR  480
RSRTHSTEEE YICAVESKAT NLLSAQPVSN SQLAAYKTAP RHHRLLGTCF CCCRWSSLQL  540
RPSRRASHAG HAADAATPRD VVLGTLEMSS SGGCYAGQSS GEPAGRPQRV RWTRELHRRF  600
VLAVSELGGA DKATPKAVLR VMDVRGLTLH HLKSYLQKYR MAVSRGLVEV TDDNGEGQND  660
RSSSSENQPD EYDEDTVTEM YRTFANDESE VLCDSSRSVT WIQREVHRNL QEQIEVQRHL  720
QLRIEAQGRY LQSVLRRAEE VLADYSLDLP EAELSELVSA AASTSSSSLS LSPLHYPSTA  780
SCVTSSSSSE AESKASAKRL CACADMRECT VEQPVQSKRG VLQSNRRQQG DADEAEAEAD  840
AENGSSGIDL NR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-16	589	645	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-16	589	645	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-16	589	645	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-16	589	645	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-16	589	645	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-16	589	645	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-16	589	645	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-16	589	645	4	60	Protein PHOSPHATE STARVATION RESPONSE 1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	74	RGMAGRGGGRG
2	377	383	LRRRRRP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11264	30	38