PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00783.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 308aa MW: 31786.7 Da PI: 6.894

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00783.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.6e-08	214	256	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r r RR+ri +++ L+el P+a K +Ka++L + ++Y+k Lq Zmw_sc00783.1.g00030.1.sm.mkhc 214 RQRLRRERIAERMKALQELAPNA-----NKTDKASMLDEIIDYVKFLQ 256 6799****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.935	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.04E-8	210	259	No hit	No description
SMART	SM00353	7.1E-9	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-12	214	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-5	214	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-11	216	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MQHTAREMQP MTTGAGQISL DDLRAAVSAG GVYDEFLDQM LGGLPPSAWT DLSGGKAPEG 60 GAQHQQQFGG MYDESALLAS RLREHQISGG GGAETKQMAD LRQGHHVMLQ GMGRSTGGDG 120 GVLLPLTLGS GGSGGNVQAL LKAAANSAGG EAGGVFGGSF AGSLQQQQQQ QRFQPHTQQQ 180 QTAPMSSQGF GGGGGGGGSG ASQQQGGGAP APPRQRLRRE RIAERMKALQ ELAPNANKTD 240 KASMLDEIID YVKFLQLQVL SMSRLGGAAA VAPLVADMSS EVTCSFSLSR LFPLATLLFP 300 HPKESAGM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	220	RLRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008667581.1	1e-94	putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBL	A0A2T7ESD1	3e-96	A0A2T7ESD1_9POAL; Uncharacterized protein
TrEMBL	A0A3L6G2F1	4e-96	A0A3L6G2F1_MAIZE; Transcription factor bHLH66
STRING	GRMZM2G350165_P02	4e-94	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118