PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00787.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 98aa MW: 10132.3 Da PI: 5.0376

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00787.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.5	4.1e-12	60	84	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p Zmw_sc00787.1.g00030.1.sm.mk 60 EPDCSYYMRTGLCRFGMTCKFNHPP 84 799********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.1E-5	57	84	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.619	57	85	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-9	60	84	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-6	61	85	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.8E-5	63	84	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MAALSAGAGA GGGGGEGSSS AAAASATIET HGVHEVAEAM WQMNLGEAAE SGPYPERVGE 60 PDCSYYMRTG LCRFGMTCKF NHPPDRKLLD GLMKHSLD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001141157.1	2e-31	Zinc finger CCCH domain-containing protein 33
Swissprot	Q2R4J4	7e-30	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A3L6Q1A7	2e-30	A0A3L6Q1A7_PANMI; Zinc finger CCCH domain-containing protein 63 isoform X1
TrEMBL	I1R036	1e-30	I1R036_ORYGL; Uncharacterized protein
STRING	ORGLA11G0112800.1	2e-31	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25763	4	5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]