PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00801.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 567aa MW: 60070.4 Da PI: 7.0095

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00801.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.6	1.1e-34	208	299	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y++++d++++++isw+e+g +fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+ Zmw_sc00801.1.g00180.1.am.mk 208 FLTKTYQLVDDPAVDDVISWNEDGLTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFA 279 9***************************************************************99......... PP ESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkks 102 ++ F++g+k+ll++i+r+k Zmw_sc00801.1.g00180.1.am.mk 280 NDCFRRGEKRLLCDIHRRKV 299 ***************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.2E-37	201	292	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-58	204	297	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.72E-34	205	297	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.3E-20	208	231	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.4E-31	208	297	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-20	246	258	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	247	271	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-20	259	271	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MRDILAHGVR AAVSGHLPLG EVLDSTMDTM CGTLELRPSL HADLAWSLHP TLARVALAFG 60 VAGVDSRRDS LAAGKAVQRK NLIAPRTRYP MIDTCPVHPG PCPRVPEPSR RKQPRKKVTE 120 PSRSSSAHHE ANHTEPNRTL PPITAVHVPM ELNPTPEDRA AGGYQCGRAH SARAGAAAAE 180 ASASEPPPPA PVPSPAEAVG QRTLPTPFLT KTYQLVDDPA VDDVISWNED GLTFVVWRPA 240 EFARDLLPKY FKHNNFSSFV RQLNTYGFRK IVPDRWEFAN DCFRRGEKRL LCDIHRRKVA 300 PAQAAPAAGL ATAAAAAASG AVTVAAAPIP MALPVTLPGS PGLSSDEQVL SSNSGSAEDH 360 PHAPSGSGGG ASGSPSSDMG EENERLRREN ARLTRELGQM KKLCNNIVLL MSKYAASQQL 420 DASAALSSVV NNSGESSEAL PQLPPLPPAL LELMPSCPAA LATAAAGLAA EPDAAARLFG 480 VSIGLKRTRE EDSGDGEEPA DHGRGSVEAK PEVSDAQQHP GSKETTPSSP DQHRWPIYRP 540 TPVYHSTRVC NGQDPGPGSD QDGSSSR

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MRDILAHGVR AAVSGHLPLG EVLDSTMDTM CGTLELRPSL HADLAWSLHP TLARVALAFG  60
VAGVDSRRDS LAAGKAVQRK NLIAPRTRYP MIDTCPVHPG PCPRVPEPSR RKQPRKKVTE  120
PSRSSSAHHE ANHTEPNRTL PPITAVHVPM ELNPTPEDRA AGGYQCGRAH SARAGAAAAE  180
ASASEPPPPA PVPSPAEAVG QRTLPTPFLT KTYQLVDDPA VDDVISWNED GLTFVVWRPA  240
EFARDLLPKY FKHNNFSSFV RQLNTYGFRK IVPDRWEFAN DCFRRGEKRL LCDIHRRKVA  300
PAQAAPAAGL ATAAAAAASG AVTVAAAPIP MALPVTLPGS PGLSSDEQVL SSNSGSAEDH  360
PHAPSGSGGG ASGSPSSDMG EENERLRREN ARLTRELGQM KKLCNNIVLL MSKYAASQQL  420
DASAALSSVV NNSGESSEAL PQLPPLPPAL LELMPSCPAA LATAAAGLAA EPDAAARLFG  480
VSIGLKRTRE EDSGDGEEPA DHGRGSVEAK PEVSDAQQHP GSKETTPSSP DQHRWPIYRP  540
TPVYHSTRVC NGQDPGPGSD QDGSSSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	6e-25	208	297	10	110	Heat shock factor protein 1
5hdn_A	6e-25	208	297	10	110	Heat shock factor protein 1
5hdn_B	6e-25	208	297	10	110	Heat shock factor protein 1
5hdn_C	6e-25	208	297	10	110	Heat shock factor protein 1
5hdn_D	6e-25	208	297	10	110	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957414.1	1e-179	heat stress transcription factor B-2c isoform X2
Refseq	XP_025802933.1	1e-179	heat stress transcription factor B-2c-like
Swissprot	Q652B0	1e-144	HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBL	A0A0A9DMW6	1e-178	A0A0A9DMW6_ARUDO; Uncharacterized protein
STRING	Si030094m	1e-179	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Rerksiri W,Zhang X,Xiong H,Chen X Expression and promoter analysis of six heat stress-inducible genes in rice. ScientificWorldJournal, 2013. 2013: p. 397401 [PMID:24459431]