PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00807.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 562aa MW: 61690 Da PI: 8.3702

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00807.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.5	1.3e-09	489	523	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +yps++e+ LA+++gL+++q+ +WF N+R ++ Zmw_sc00807.1.g00020.1.am.mk 489 EWPYPSETEKIALAQSTGLDQKQINNWFINQRKRH 523 669*****************************885 PP
2	ELK	32.1	2.6e-11	443	464	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 EL qLl+KYsgyL+sL+qEFs Zmw_sc00807.1.g00020.1.am.mk 443 ELNYQLLKKYSGYLSSLRQEFS 464 5667*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.1E-20	270	314	IPR005540	KNOX1
Pfam	PF03790	1.8E-21	271	312	IPR005540	KNOX1
SMART	SM01256	7.0E-25	318	369	IPR005541	KNOX2
Pfam	PF03791	2.0E-21	325	366	IPR005541	KNOX2
Pfam	PF03789	2.9E-8	443	464	IPR005539	ELK domain
SMART	SM01188	5.4E-7	443	464	IPR005539	ELK domain
PROSITE profile	PS51213	10.825	443	463	IPR005539	ELK domain
PROSITE profile	PS50071	12.908	463	526	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.12E-19	464	538	IPR009057	Homeodomain-like
SMART	SM00389	3.8E-13	465	530	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.7E-28	468	527	IPR009057	Homeodomain-like
CDD	cd00086	1.18E-12	475	527	No hit	No description
Pfam	PF05920	1.9E-16	483	522	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	501	524	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MVLCVEELVV KHTDCTVGRG GMARPHEQDR VKGTTSSDEK PEWIQKIELA LAPEPLANRA 60 HLTLVLNRYS ASISPPVSSP VRFDARKGVA TSTDAHIGPD CPLALAHTFP FSVHTPPSNL 120 INISLPSTLS LPLPAALHGH DRHYWCGEKR EKLQSSPGPA GRLLCPPNFS VRLASARFWP 180 VYFMDQSFVN LGAGGCSSGA SNSKPAAPGS SSFLQLPLSS TTVAAPAGVA YYGAPLTLLH 240 QVAGPSPAAS QSQSQYGRHA EMSMSPAEVG AVKAKIVAHP QYSALLAAYL DCQKVGAPPD 300 VVEKLTATAA KLDARPPPNR HEPREPELDQ FMEAYCNMLA KYREELRRPI NEATEFIKRL 360 EAQLDSVSGA TATAARLSLA GESLPGLRFH LSYGTVRSRV SSFRSSLDLD GKSEGAGSSE 420 DDMDASGRGN EPPEIDPRAE YKELNYQLLK KYSGYLSSLR QEFSKKKKKG KLPKEARQKL 480 LHWWELHYEW PYPSETEKIA LAQSTGLDQK QINNWFINQR KRHWKPSEDM PFVMMEGFHP 540 QNSAAFYLDG PFMADGMYRL GS

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MVLCVEELVV KHTDCTVGRG GMARPHEQDR VKGTTSSDEK PEWIQKIELA LAPEPLANRA  60
HLTLVLNRYS ASISPPVSSP VRFDARKGVA TSTDAHIGPD CPLALAHTFP FSVHTPPSNL  120
INISLPSTLS LPLPAALHGH DRHYWCGEKR EKLQSSPGPA GRLLCPPNFS VRLASARFWP  180
VYFMDQSFVN LGAGGCSSGA SNSKPAAPGS SSFLQLPLSS TTVAAPAGVA YYGAPLTLLH  240
QVAGPSPAAS QSQSQYGRHA EMSMSPAEVG AVKAKIVAHP QYSALLAAYL DCQKVGAPPD  300
VVEKLTATAA KLDARPPPNR HEPREPELDQ FMEAYCNMLA KYREELRRPI NEATEFIKRL  360
EAQLDSVSGA TATAARLSLA GESLPGLRFH LSYGTVRSRV SSFRSSLDLD GKSEGAGSSE  420
DDMDASGRGN EPPEIDPRAE YKELNYQLLK KYSGYLSSLR QEFSKKKKKG KLPKEARQKL  480
LHWWELHYEW PYPSETEKIA LAQSTGLDQK QINNWFINQR KRHWKPSEDM PFVMMEGFHP  540
QNSAAFYLDG PFMADGMYRL GS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693}.
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693, ECO:0000269\|PubMed:9869405}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955415.1	1e-173	homeobox protein rough sheath 1
Swissprot	O65034	1e-149	KNOSC_ORYSI; Homeobox protein knotted-1-like 12
Swissprot	O80416	1e-149	KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBL	A0A368PV50	1e-171	A0A368PV50_SETIT; Uncharacterized protein
STRING	Pavir.Bb00225.1.p	1e-170	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4061	38	73

Publications ? help Back to Top
Sato Y, et al. Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants. EMBO J., 1999. 18(4): p. 992-1002 [PMID:10022841] Ito Y,Eiguchi M,Kurata N KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice. Genesis, 2001. 30(4): p. 231-8 [PMID:11536429] Nagasaki H,Sakamoto T,Sato Y,Matsuoka M Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15. Plant Cell, 2001. 13(9): p. 2085-98 [PMID:11549765] Postma-Haarsma AD, et al. Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice. Plant Mol. Biol., 2002. 48(4): p. 423-41 [PMID:11908517] Kuijt SJ, et al. Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice. Plant Mol. Biol., 2004. 55(6): p. 781-96 [PMID:15604716] Yin H, et al. SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice. Planta, 2013. 237(1): p. 15-27 [PMID:22956125]