PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00819.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 307aa MW: 33128.5 Da PI: 10.9829

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00819.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00066	180	202	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C++ F ++ L H++ H Zmw_sc00819.1.g00060.1.am.mk 180 FACNYCHRKFYSSQALGGHQNGH 202 78*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.79E-5	177	207	No hit	No description
PROSITE profile	PS50157	10.575	180	207	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	182	202	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MFRASARTPD ARNRPMFRAV DHRHGMEAAG IFAFAKANTR LHQRLGRVCP APELHPRIRP 60 RSQDQQLSLN TRLEPHRSLA LGLSTALHPA SSQALAAPAK LSLLPPSLPR LQHRPPAPQT 120 SQRLSIPASF LPPANQSMER NEPSSQAPGV NLDLRLDVSP RRRPAPTTAP LAVDTRGEAF 180 ACNYCHRKFY SSQALGGHQN GHKLERTLAK RSRDIAAAGA PPPSSPRRSA TTLVHAAATE 240 YGAGGEFWTT TLPFRAAGGA PEEYVAVTMT PPPRIDEVGG WAAAGDGGCG RLDYARNGEE 300 IDLSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804127.1	7e-39	zinc finger protein 10-like
TrEMBL	A0A0A9GP56	3e-44	A0A0A9GP56_ARUDO; Uncharacterized protein
STRING	Pavir.Ba01492.1.p	5e-32	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274