PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00819.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 635aa MW: 68054.8 Da PI: 10.0632

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00819.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.5	3e-12	329	428	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikege 68 +W+++ + L+ea++ ++ +r+klk +W ++++ + + ++p+qCk+k+e+++kry+++ + Zmw_sc00819.1.g00080.1.am.mk 329 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWIDIASEVsaycaddtaatgkPGGNSAKTPNQCKNKIESMKKRYRAESAAV 409 5****************************99999999999***966666799*************998766 PP trihelix 69 kkr.tsessstcpyfdqle 86 + + + ++++f +++ Zmw_sc00819.1.g00080.1.am.mk 410 ARAgPAAAGPSWRFFARMD 428 66536778889***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-13	327	429	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MVTVNRCSRD PRTFRGVISM AAGDGEKDAG CHQPRASGGR KRGGAVGGEA SALAWVSRRV 60 RSPPTAGGPA PAARGCCSAC RGKRGPSAGA WEGSTPPPDS LRGSRTTVHR AAGRARRQEP 120 AADSRETEEF VSLRGRTEGR APNRCGLLPV RAAWSPWGGP APRARPRPAR RSDQRWCHAP 180 LDFPTPPGAV PNLMRPDARL HSPTLXXXXT RAVEAGRGRA ELPAPVSPHF APLRAAQSPP 240 PRPPASTALD ALSSASSLSP CSARSTPCAL ASARRFFLLN FCRGQPPQTR HQLAPAEFDH 300 FLGSGSMDGL APDADAAPLA AAPPQKRDEW SESGIVRLLE AYEAKWLLRN RAKLKWSDWI 360 DIASEVSAYC ADDTAATGKP GGNSAKTPNQ CKNKIESMKK RYRAESAAVA RAGPAAAGPS 420 WRFFARMDGL LKGPAGCSGQ AQQVELGNSI DLQAPAKAEV EAEPCFSAQL PDPGPGAFAD 480 LMNIDANGSV PEKADKVDNS VHKEIRTADS DANVNSPRSK VANEDADEED KLWDMPKKRK 540 STEFAIAKSI ELLASSFLKV EHARMEMYRE TERMRIEAEI KKGEMELKRT EIMAKTHLQI 600 AKLFAKRLKE GGGRTGGSSS VTAEVDTLTK KGEND

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MVTVNRCSRD PRTFRGVISM AAGDGEKDAG CHQPRASGGR KRGGAVGGEA SALAWVSRRV  60
RSPPTAGGPA PAARGCCSAC RGKRGPSAGA WEGSTPPPDS LRGSRTTVHR AAGRARRQEP  120
AADSRETEEF VSLRGRTEGR APNRCGLLPV RAAWSPWGGP APRARPRPAR RSDQRWCHAP  180
LDFPTPPGAV PNLMRPDARL HSPTLXXXXT RAVEAGRGRA ELPAPVSPHF APLRAAQSPP  240
PRPPASTALD ALSSASSLSP CSARSTPCAL ASARRFFLLN FCRGQPPQTR HQLAPAEFDH  300
FLGSGSMDGL APDADAAPLA AAPPQKRDEW SESGIVRLLE AYEAKWLLRN RAKLKWSDWI  360
DIASEVSAYC ADDTAATGKP GGNSAKTPNQ CKNKIESMKK RYRAESAAVA RAGPAAAGPS  420
WRFFARMDGL LKGPAGCSGQ AQQVELGNSI DLQAPAKAEV EAEPCFSAQL PDPGPGAFAD  480
LMNIDANGSV PEKADKVDNS VHKEIRTADS DANVNSPRSK VANEDADEED KLWDMPKKRK  540
STEFAIAKSI ELLASSFLKV EHARMEMYRE TERMRIEAEI KKGEMELKRT EIMAKTHLQI  600
AKLFAKRLKE GGGRTGGSSS VTAEVDTLTK KGEND

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802935.1	1e-172	trihelix transcription factor ASIL1-like
STRING	Pavir.Ba01421.1.p	1e-173	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46