PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00840.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 483aa MW: 52285.2 Da PI: 7.9837

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00840.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.4e-52	52	180	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat Zmw_sc00840.1.g00170.1.am.mk 52 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRAT 131 69**************************.9***********952444443456****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+Wkatg+dk+++s ++ +g++ktLvfykgrap+g+k+dW+mheyrl Zmw_sc00840.1.g00170.1.am.mk 132 AAGFWKATGRDKAIYS-CTRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 180 ************.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-53	46	182	IPR003441	NAC domain
PROSITE profile	PS51005	51.411	52	283	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	53	180	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MVPLRLSLAL FRMPRLLPLI VYLPLSPRFF LPGPDGGDHP PRSRPIALLS AVPPGFRFHP 60 TEEELLTYYL KKKVASERID LDVIRDVDLN KLEPWDIQEK CRIGSGPQND WYFFSHKDKK 120 YPTGTRTNRA TAAGFWKATG RDKAIYSCTR RIGMRKTLVF YKGRAPHGQK SDWIMHEYRL 180 DDVQTPAAGV DPYYPSPPPP PPALELGLGV PGLLVEISMA GGEVVGLGSP WKATEFAHQQ 240 DHQTCVSKGQ PKTAGRVRMR GGAAAGDQAA QEEGWVICRV FKKKNLVLHH GQSSGGGGTT 300 TVATAASKTA AATTMESSPT SNGSSVTVTD QVKAQLLHSA SDDALDHILQ YIGRSYHTNN 360 EQDTKPPPAL QLDHHLAATT ATACPAGSSF YGRFMKLPPL EHVGAGLLPN PAGYAADASG 420 IADWDSLDRL AAYEFNGLSD ASKNMVAFLE EPNAAAGTGD GDLWSLARSS VSSLHPDLTM 480 NNV

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MVPLRLSLAL FRMPRLLPLI VYLPLSPRFF LPGPDGGDHP PRSRPIALLS AVPPGFRFHP  60
TEEELLTYYL KKKVASERID LDVIRDVDLN KLEPWDIQEK CRIGSGPQND WYFFSHKDKK  120
YPTGTRTNRA TAAGFWKATG RDKAIYSCTR RIGMRKTLVF YKGRAPHGQK SDWIMHEYRL  180
DDVQTPAAGV DPYYPSPPPP PPALELGLGV PGLLVEISMA GGEVVGLGSP WKATEFAHQQ  240
DHQTCVSKGQ PKTAGRVRMR GGAAAGDQAA QEEGWVICRV FKKKNLVLHH GQSSGGGGTT  300
TVATAASKTA AATTMESSPT SNGSSVTVTD QVKAQLLHSA SDDALDHILQ YIGRSYHTNN  360
EQDTKPPPAL QLDHHLAATT ATACPAGSSF YGRFMKLPPL EHVGAGLLPN PAGYAADASG  420
IADWDSLDRL AAYEFNGLSD ASKNMVAFLE EPNAAAGTGD GDLWSLARSS VSSLHPDLTM  480
NNV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-43	52	180	15	140	Stress-induced transcription factor NAC1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002436417.1	1e-152	NAC domain-containing protein 43
TrEMBL	Q5NKS7	1e-151	Q5NKS7_SORBI; Putative NAM (No apical meristem) protein
STRING	Sb10g002120.1	1e-152	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1597	38	112