PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00844.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 255aa MW: 27323.7 Da PI: 6.6885

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00844.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.6	4e-33	12	104	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 F+ k+y ++ed+ ++ +i w + +nsf+v d+ f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+ Zmw_sc00844.1.g00210.1.am.mk 12 FVWKTYMMVEDPGTDGIIGWGRANNSFIVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFA 83 9******************999*************************************999......... PP ESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkkse 103 h sF +g+ +ll++i r+ s+ Zmw_sc00844.1.g00210.1.am.mk 84 HASFLRGQAHLLRNIVRRGSS 104 ***************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	7.7E-51	8	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.53E-33	9	101	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.4E-37	9	101	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.4E-28	12	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.8E-17	12	35	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.8E-17	50	62	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	51	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.8E-17	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MAASGGGAAA PFVWKTYMMV EDPGTDGIIG WGRANNSFIV ADPFVFSQTL LPAHFKHNNF 60 SSFVRQLNTY GFRKVDPDRW EFAHASFLRG QAHLLRNIVR RGSSAGNGGG KRAKDALPAA 120 DGDDMAMVAT EVVRLKQEQR AIDDRVASMW RRVQETERRP KQMLAFLLKV VGDRDRLHRL 180 VGDAAAAPDA RGNEAAAEVG GEKRARLLLD GDVGAFGPDA ADFAGFYGGG EDALGDVAVD 240 AGGGCSFAFG VDTGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-25	5	101	17	129	Heat shock factor protein 1
5d5v_B	2e-25	5	101	17	129	Heat shock factor protein 1
5d5v_D	2e-25	5	101	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965592.1	1e-133	heat stress transcription factor C-2b
Swissprot	Q0DBL6	1e-116	HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBL	A0A0A9DRA1	1e-137	A0A0A9DRA1_ARUDO; Uncharacterized protein
STRING	GRMZM2G118047_P01	1e-127	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4471	34	70