PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00845.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 305aa MW: 33910.6 Da PI: 8.9389

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00845.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.1	2e-10	37	61	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C f++r+ tCkyG+ C+F H+ Zmw_sc00845.1.g00060.1.sm.mkhc 37 GEKACAFYMRSRTCKYGEDCRFDHP 61 7789********************8 PP
2	zf-CCCH	37.2	5e-12	90	114	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ +tG Ck+G++C+F H++ Zmw_sc00845.1.g00060.1.sm.mkhc 90 ERVCSYYEKTGKCKFGASCRFDHPK 114 689********************96 PP
3	zf-CCCH	36.5	8.3e-12	181	205	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tGtCky d+CkF+H+ Zmw_sc00845.1.g00060.1.sm.mkhc 181 GETVCDFYMKTGTCKYTDKCKFHHP 205 6789********************8 PP
4	zf-CCCH	38.6	1.8e-12	237	260	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C f++++GtCk+G +C+F H+p Zmw_sc00845.1.g00060.1.sm.mkhc 237 EVCAFYMKSGTCKFGVQCRFDHPP 260 78********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0015	35	62	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.31	35	63	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-5	35	61	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.5E-8	37	61	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.676	87	115	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.7E-6	87	114	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-6	88	115	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-9	90	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-6	91	114	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.19E-6	178	207	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-7	179	206	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.549	179	207	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-9	181	205	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-6	184	205	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.3E-6	233	260	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.263	233	261	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-6	235	262	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.2E-10	237	260	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-5	237	260	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MGSHSTVGQS EPLYSSNTMV KRPRLESNLT IYPRRPGEKA CAFYMRSRTC KYGEDCRFDH 60 PHWVPGGGIP NWREKPKSAD STALPVRPSE RVCSYYEKTG KCKFGASCRF DHPKENEMPT 120 LIGRQTIYTA TIDAEVCNVS TDGSTPEKKH TPAGPAEAHN TKGLPIRPGE PEPVTYPQRP 180 GETVCDFYMK TGTCKYTDKC KFHHPIDCSV PRPNESWDPQ QTVILTPAGL PRREDAEVCA 240 FYMKSGTCKF GVQCRFDHPP PEEAISRLKA AGGKKGAKKA AKLMAAARKQ DEKKSEGLSI 300 VLDRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020397512.1	1e-101	uncharacterized protein LOC100216717 isoform X2
Swissprot	Q5ZDJ6	2e-72	C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBL	A0A1D6FZC3	1e-100	A0A1D6FZC3_MAIZE; Zinc finger CCCH domain-containing protein 37
TrEMBL	A0A1D6NMC3	1e-101	A0A1D6NMC3_MAIZE; Zinc finger CCCH domain-containing protein 37
STRING	Pavir.Ea02049.1.p	1e-85	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5816	37	57

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhu RS,Xu ZF,Lin MC Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8. J Chem Phys, 2004. 120(14): p. 6566-73 [PMID:15267548]