PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00855.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 373aa MW: 41557.6 Da PI: 8.8734

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00855.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	85.4	7.8e-27	8	79	23	103
SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 23 engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103 gn+fvv+d++e+a +Lp++Fkh nfaSFvRQLn+YgF+kv+ ++ weF+h+sF +g+k+ll++ikr++ + Zmw_sc00855.1.g00020.1.am.mk 8 GAGNAFVVWDPRELAAALLPRFFKHANFASFVRQLNIYGFRKVNPDR---------WEFAHESFLAGQKHLLKNIKRRRPS 79 5789**************************************999.........*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	7.2E-28	7	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.85E-23	8	76	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.6E-26	9	76	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	6.9E-23	9	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-8	25	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	26	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-8	38	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MRTLGVTGAG NAFVVWDPRE LAAALLPRFF KHANFASFVR QLNIYGFRKV NPDRWEFAHE 60 SFLAGQKHLL KNIKRRRPSK HYPDSQPRTG SSVCLGDDIR EVQSLKRDRA SLMAELAMLK 120 QRYSRCKSLL AAMEDRVRDN ERKQQLIVAF FAKVLTNPAF LQQQLNRLRN VELCGGAAKR 180 QRLMASEEQQ QYQQHVGAPV VENGVVEAAA ASAITEADVS ETGSSSDGGV AAVKHETMPE 240 WNGVQSFDNI CDDVWEELGA IPGTEVEQEV IAAASFDVEE FPGKPCGWVD DCPYLVDPMP 300 RAVTEFGTGL KLIRRPTRPN SLWIWIPNRH CILAHILLIA ASGLRPPPPP RLDGFFSPPR 360 RAIAAAGVLL RRG

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MRTLGVTGAG NAFVVWDPRE LAAALLPRFF KHANFASFVR QLNIYGFRKV NPDRWEFAHE  60
SFLAGQKHLL KNIKRRRPSK HYPDSQPRTG SSVCLGDDIR EVQSLKRDRA SLMAELAMLK  120
QRYSRCKSLL AAMEDRVRDN ERKQQLIVAF FAKVLTNPAF LQQQLNRLRN VELCGGAAKR  180
QRLMASEEQQ QYQQHVGAPV VENGVVEAAA ASAITEADVS ETGSSSDGGV AAVKHETMPE  240
WNGVQSFDNI CDDVWEELGA IPGTEVEQEV IAAASFDVEE FPGKPCGWVD DCPYLVDPMP  300
RAVTEFGTGL KLIRRPTRPN SLWIWIPNRH CILAHILLIA ASGLRPPPPP RLDGFFSPPR  360
RAIAAAGVLL RRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	5e-17	9	79	42	123	Heat shock factor protein 1
5d5u_B	7e-17	9	76	51	129	Heat shock factor protein 1
5d5v_B	7e-17	9	76	51	129	Heat shock factor protein 1
5d5v_D	7e-17	9	76	51	129	Heat shock factor protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	75	LKNIKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814071.1	1e-113	heat stress transcription factor A-6a-like
Swissprot	Q657C0	1e-109	HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBL	A0A2T7DKP3	1e-113	A0A2T7DKP3_9POAL; Uncharacterized protein
STRING	Pavir.Eb02487.1.p	1e-114	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]