PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00855.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 350aa MW: 37432.2 Da PI: 4.9377

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00855.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.1	2e-10	276	314	5	43
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaei 43 h + Er+RR+++N++f++Lr+llP++sk ++k ++ + Zmw_sc00855.1.g00160.1.am.mk 276 HMMSERKRREKLNDSFQTLRSLLPPCSKLHDKDVDRGSW 314 7899*********************97555555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.325	271	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-9	272	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-9	275	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.65E-8	276	303	No hit	No description
Pfam	PF00010	6.4E-8	276	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0048	277	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MAVDLARSQH PSASEFDRVA SPRPGRVASS HHSSCGPWPV ASDLHRSMDE EVWCDLDLQL 60 PANDVAGLHR AAHDDPFWPA LADCTASFLS ADDIDITGSA SDKVAVANDM VLDVDTSYFA 120 AEQHQDLLMV QQDQTYSSSP SSKRSFSVDD SAGTTSSPFS FALDGADAAL TAGANFDPFA 180 GDDAAIMRAM MAILSSASPS SSESSSPPQS QELNMQQAAA VHPPRRGGNN NNNGHVVAAR 240 SINSFAVGAE KTNSAGGGRQ QQDDASRAAP STQVYHMMSE RKRREKLNDS FQTLRSLLPP 300 CSKLHDKDVD RGSWLEAQED QILKKRGPLK VQLDAWKLPN GGSSLVVLIA

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MAVDLARSQH PSASEFDRVA SPRPGRVASS HHSSCGPWPV ASDLHRSMDE EVWCDLDLQL  60
PANDVAGLHR AAHDDPFWPA LADCTASFLS ADDIDITGSA SDKVAVANDM VLDVDTSYFA  120
AEQHQDLLMV QQDQTYSSSP SSKRSFSVDD SAGTTSSPFS FALDGADAAL TAGANFDPFA  180
GDDAAIMRAM MAILSSASPS SSESSSPPQS QELNMQQAAA VHPPRRGGNN NNNGHVVAAR  240
SINSFAVGAE KTNSAGGGRQ QQDDASRAAP STQVYHMMSE RKRREKLNDS FQTLRSLLPP  300
CSKLHDKDVD RGSWLEAQED QILKKRGPLK VQLDAWKLPN GGSSLVVLIA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	284	ERKRRE
2	280	285	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819658.1	3e-44	putative transcription factor bHLH041
TrEMBL	A0A0A9RPB9	5e-48	A0A0A9RPB9_ARUDO; Uncharacterized protein
STRING	Sb03g025860.1	6e-43	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34498	3	4