PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00859.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 320aa MW: 35168.9 Da PI: 5.4477

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00859.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	103.2	2.3e-32	26	117	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 F+ k+y+++ d++++ l++w +++nsfvv+d+ f++ +Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+ Zmw_sc00859.1.g00040.1.am.mk 26 FVAKTYQMVCDPRMDALVRWGKENNSFVVVDPAGFSQLLLPCFFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFA 97 9**************************************************************999......... PP ESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkks 102 h+sF +g+ +ll ++ r+k+ Zmw_sc00859.1.g00040.1.am.mk 98 HESFLRGQMHLLPRVVRRKK 117 ************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.5E-35	21	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.2E-48	22	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.81E-32	23	115	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.5E-28	26	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-16	26	49	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-16	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	65	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-16	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MDGLHTELAL GLIGFGGGAQ LQTAPFVAKT YQMVCDPRMD ALVRWGKENN SFVVVDPAGF 60 SQLLLPCFFK HSNFSSFVRQ LNTYGFRKVH PDRWEFAHES FLRGQMHLLP RVVRRKKRGE 120 GGASCSAPAG GGGGLANLGD AHRPLDEGND EEREALAEEV QRLRQEQATI GEELARMSRR 180 LQATERQPDQ LMSFLARLAE DPDGVTRNLM EQADEKKRRR LQLDSAPVVS PVPPPPLPPV 240 APPPLLALGG AAVDCDDWQW AEQKPAILLP SFDPPSSRCE VQQVPDFAAG RDVGAGVITF 300 DRDTAAETPF PFCLLGQGFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	8e-21	13	115	16	129	Heat shock factor protein 1
5d5v_B	8e-21	13	115	16	129	Heat shock factor protein 1
5d5v_D	8e-21	13	115	16	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	220	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817664.1	1e-142	heat stress transcription factor C-1a-like
Swissprot	Q6VBA4	1e-121	HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBL	A0A2S3HTS7	1e-141	A0A2S3HTS7_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DJI4	1e-141	A0A2T7DJI4_9POAL; Uncharacterized protein
STRING	Pavir.Eb01618.1.p	1e-136	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]