PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00859.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 479aa    MW: 50915.6 Da    PI: 8.156
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00859.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.22.5e-26300358259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  Zmw_sc00859.1.g00100.1.am.mk 300 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 358
                                   799***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182905.36E-24298360IPR003657WRKY domain
SMARTSM007743.6E-31299359IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-26299360IPR003657WRKY domain
PROSITE profilePS5081129.126300360IPR003657WRKY domain
PfamPF031063.4E-22301358IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MTRERAPRFG LPLDPSLSLS LPFDNWSKVN EDTAKAYCSS VQIPAQSFIL PRPPCPPLEV  60
DFLLVPSGPF CTIGRRASPD PAGLRLDQRQ KSTLLPPSLA EHASSHPRSS RVKGWLGSSR  120
RAFMRGPLLL VSMESFNDWD LQAVVRSCSF AHAEEPAGAP RAAAAPVRDV AAAQERRAPV  180
VRAAAPVPVP GRASAAAGVV VKQEASSSRM HGLEYLDLDH KPFLLPPSAT TAAASRAGDD  240
VREVMISFPA ASTSGAQSRA VPPGRNKAGP RTPRPKRSKK SQLKKVVREM PVADGGVSAS  300
DPWAWRKYGQ KPIKGSPYPR GYYKCSSMKG CMARKLVERS PAKPGVLIVT YMAEHCHPVP  360
TQLNALAGTT RHTKSASAAT AAEDRPAASS PKSHEQQGPV SDEAARCDAA DSNEASTAPV  420
AAVECGGTEE AAAALADDDG EFLPAGMDLD ELLATVDDDF DFEPVPDDDD GVLGRRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-18280361280Disease resistance protein RRS1
5w3x_D9e-18280361280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458190.11e-121probable WRKY transcription factor 27
TrEMBLA0A1E5UWP31e-124A0A1E5UWP3_9POAL; WRKY transcription factor 22
STRINGSb03g028440.11e-120(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070