PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00860.1.g00290.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 1482aa MW: 161753 Da PI: 8.005

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00860.1.g00290.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.1	2.4e-09	783	825	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE e++ + +++G++ +++I++ + ++t +c+++++k+ Zmw_sc00860.1.g00290.1.sm.mkhc 783 PWSKEEKEIFMEMLAKFGKD-FSKISSFLT-HKTTADCVEFYYKH 825 8***************99.****9.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.13E-15	767	828	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.495	779	830	IPR017884	SANT domain
SMART	SM00717	3.5E-10	780	828	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-7	783	827	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-7	783	825	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	13.233	987	1038	IPR017884	SANT domain
SMART	SM00717	8.3E-6	988	1036	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.59E-9	990	1038	IPR009057	Homeodomain-like
CDD	cd00167	2.35E-4	992	1030	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1482 aa Download sequence Send to blast
MPPPDRRDYL YREGRRHDGD GGGDPLPPPD PTPPRWRDSP YPPPALRDHA RLSPRRAPSS 60 NSSGRPAPRT SSDLRLLLPP PSFPAPLNPP NRFAVSEGYY RQGGGAYDRP YPDEMPPGYT 120 PSRSDRYWVD DEGGGYKGFS RYGGGFGRRD GRDMRGSFRR APFRSYGNDL SRNHQEQPPP 180 PPGPPLWRSP LRSLAVPSYD DTGDRENQPQ VAPWRRRENR SEAAGDMRGT FWRSPFRSYD 240 NDISKNHQEH PPSSPPRRSP LRSFAVPIYD PPGTLLNKGD RDNLLRVTPW RRRENRSEAA 300 GAAGVGHVSS GQSTCPAASE KVVSAHPLAV TSPHGAEEGA PRKKARLGWG QGLAKYEKQK 360 VQGPSEPAEA VSDGSLAGTG QGVAFPAPAP ALCTSPVAVP PPPPLCTSAV DARPPPPVFC 420 ASLVAVPSPH SARCSSPVAL PSSAPVLLGC ASSVTVPAPA AAHPPCTSLV AVPSPAPGEL 480 RTVGTVAGTA PKDSPTGVTS TENVSPSTGT SKVPGSVKIC DKSCVKEHRE LSPCPKIPVV 540 QDASAKDAEM MEIETAHNAK TASSEESAAC PEGQAHAAAD VGPMKISGGA KLQIDVDNEK 600 LEGSSCRIDT DSVKADGIVD LPGGQCHFSI PRNSDAFIKE RLVLHKSRLR FKQNALTFKF 660 RTLRYLWKQD ARLLWARKQR SKSSKRIDHS SRALHFGSQR QRSTNRSRLL MPAVNSSIFP 720 TPEISDIANK MYSEFQIKCC RNYLKMPVLI INEKEKECSR FVNKNGLVED PIAVEKERVL 780 INPWSKEEKE IFMEMLAKFG KDFSKISSFL THKTTADCVE FYYKHHKSDS FREVKKLLDQ 840 RQQQKPTSNF LGAKSGKKWD REANAASLDI LGVASAVAAQ GLEYEKRVEK ISAKSLIRNG 900 SNVSFVARKS SRECLDSVSL HERESVAADV LAGICDTLSL EGMSSCITSS ADPSQMINVT 960 RMEHALTQEI DKTADDKDRL SDEECEVDPA DWNDDEKSIF IEAMNNYGKD FAQISSCVKS 1020 KSYEQCKVFF SKARKSLGLD LIHQAEADVS MPTSDTNGGS RDNQACAAEM DSAICSSQYF 1080 AKTEMDVCTT ERAMQGPSYC IISKQTEGDG SNDCDGLDVK TEEGENKADK ICTLGQKLFS 1140 DVGHRSTCGP IDINCPETTE KLEGLDDTVD QMHMQNNSAI ISSKEQLEAS IEGRSHPVLD 1200 TALVKAGNSG PPASIAAETD IKENIRQLSK MTGASSISTV STSSYQHSMP GNKLPAKPKQ 1260 HVTPLTPKDL MPVQFSSVLP DPTSIRFEGI ASITTPNFED TGNKACNALE AKDMNKYPSF 1320 KDQSQSGQHT TLFRNISGYT KHVATDSPIF SERNTSGTES TSQSDQFTVT KFQNGRSSSL 1380 GVPNTTDGIH WDRGHSEVSN GSLRPYSCNT CSEGNEQIKR PGDVKLFGQI LSHQSSQNSG 1440 SSCYQQPVMQ AHQSDQKRME RFSDPHKRNG MEFISGFQRP GK

Sequence ? help Back to Top

Protein Sequence Length: 1482 aa Download sequence Send to blast

MPPPDRRDYL YREGRRHDGD GGGDPLPPPD PTPPRWRDSP YPPPALRDHA RLSPRRAPSS  60
NSSGRPAPRT SSDLRLLLPP PSFPAPLNPP NRFAVSEGYY RQGGGAYDRP YPDEMPPGYT  120
PSRSDRYWVD DEGGGYKGFS RYGGGFGRRD GRDMRGSFRR APFRSYGNDL SRNHQEQPPP  180
PPGPPLWRSP LRSLAVPSYD DTGDRENQPQ VAPWRRRENR SEAAGDMRGT FWRSPFRSYD  240
NDISKNHQEH PPSSPPRRSP LRSFAVPIYD PPGTLLNKGD RDNLLRVTPW RRRENRSEAA  300
GAAGVGHVSS GQSTCPAASE KVVSAHPLAV TSPHGAEEGA PRKKARLGWG QGLAKYEKQK  360
VQGPSEPAEA VSDGSLAGTG QGVAFPAPAP ALCTSPVAVP PPPPLCTSAV DARPPPPVFC  420
ASLVAVPSPH SARCSSPVAL PSSAPVLLGC ASSVTVPAPA AAHPPCTSLV AVPSPAPGEL  480
RTVGTVAGTA PKDSPTGVTS TENVSPSTGT SKVPGSVKIC DKSCVKEHRE LSPCPKIPVV  540
QDASAKDAEM MEIETAHNAK TASSEESAAC PEGQAHAAAD VGPMKISGGA KLQIDVDNEK  600
LEGSSCRIDT DSVKADGIVD LPGGQCHFSI PRNSDAFIKE RLVLHKSRLR FKQNALTFKF  660
RTLRYLWKQD ARLLWARKQR SKSSKRIDHS SRALHFGSQR QRSTNRSRLL MPAVNSSIFP  720
TPEISDIANK MYSEFQIKCC RNYLKMPVLI INEKEKECSR FVNKNGLVED PIAVEKERVL  780
INPWSKEEKE IFMEMLAKFG KDFSKISSFL THKTTADCVE FYYKHHKSDS FREVKKLLDQ  840
RQQQKPTSNF LGAKSGKKWD REANAASLDI LGVASAVAAQ GLEYEKRVEK ISAKSLIRNG  900
SNVSFVARKS SRECLDSVSL HERESVAADV LAGICDTLSL EGMSSCITSS ADPSQMINVT  960
RMEHALTQEI DKTADDKDRL SDEECEVDPA DWNDDEKSIF IEAMNNYGKD FAQISSCVKS  1020
KSYEQCKVFF SKARKSLGLD LIHQAEADVS MPTSDTNGGS RDNQACAAEM DSAICSSQYF  1080
AKTEMDVCTT ERAMQGPSYC IISKQTEGDG SNDCDGLDVK TEEGENKADK ICTLGQKLFS  1140
DVGHRSTCGP IDINCPETTE KLEGLDDTVD QMHMQNNSAI ISSKEQLEAS IEGRSHPVLD  1200
TALVKAGNSG PPASIAAETD IKENIRQLSK MTGASSISTV STSSYQHSMP GNKLPAKPKQ  1260
HVTPLTPKDL MPVQFSSVLP DPTSIRFEGI ASITTPNFED TGNKACNALE AKDMNKYPSF  1320
KDQSQSGQHT TLFRNISGYT KHVATDSPIF SERNTSGTES TSQSDQFTVT KFQNGRSSSL  1380
GVPNTTDGIH WDRGHSEVSN GSLRPYSCNT CSEGNEQIKR PGDVKLFGQI LSHQSSQNSG  1440
SSCYQQPVMQ AHQSDQKRME RFSDPHKRNG MEFISGFQRP GK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-15	750	832	12	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-15	750	832	12	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001349284.1	0.0	uncharacterized protein LOC100384382
Refseq	XP_020394715.1	0.0	uncharacterized protein LOC100384382 isoform X1
TrEMBL	A0A3L6STJ3	0.0	A0A3L6STJ3_PANMI; Uncharacterized protein
STRING	GRMZM2G447745_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49