PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00864.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 205aa    MW: 21759.3 Da    PI: 6.4864
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00864.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345e-1174100127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++++ C +++rtG C++G +C+F+H+p
  Zmw_sc00864.1.g00090.1.sm.mkhc  74 PGEPDCTYYLRTGLCRFGMSCRFNHPP 100
                                     5789*********************97 PP
2zf-CCCH43.45.5e-14138163227
                                     -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++elC+f++r+G+Ck+G++CkF H++
  Zmw_sc00864.1.g00090.1.sm.mkhc 138 GEELCKFYSRYGICKFGANCKFDHPM 163
                                     689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.97173101IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-573100IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-875100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-578101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-47999IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084136164IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-11138163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-6140161IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MENAGRTSAP AAVAVTVSAS ASAAPAPPPP SATTTAAADT SSSDPSALYE EAMWQQMAMD  60
SGTTMQPGPY PERPGEPDCT YYLRTGLCRF GMSCRFNHPP DRNLAIAPAR MKGEYPERVG  120
QPECQFKNRV SNSLGQEGEE LCKFYSRYGI CKFGANCKFD HPMATTPMGV YAYGFNASTS  180
PASAPTNVPT VQRLLGSPSA SGYTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971057.17e-71zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB51e-55C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1D6N3813e-70A0A1D6N381_MAIZE; Zinc finger CCCH domain-containing protein 33
TrEMBLK3XI362e-69K3XI36_SETIT; Uncharacterized protein
STRINGSi001558m3e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17256611
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]