PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00889.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 220aa MW: 24119.9 Da PI: 7.0049

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00889.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.3e-13	154	199	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +e+L AveYIk+Lq Zmw_sc00889.1.g00080.1.sm.mkhc 154 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSEMLDTAVEYIKELQ 199 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.348	148	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-16	151	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.04E-13	152	203	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.9E-17	153	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-10	154	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSATTGMGSY PHGGTDTMAH GHNRRLSSQW SFSRQDLPQI SEMGMIPDIG ESIIAGGCNS 60 SSDGGAQSSS YLSRNFSVGS WDDTNSIMFS SPGKKVKVDA ADDMVTSFSN IDSQFGLSKS 120 SLEMSGMDDY LQLQQDSIAC RVRAKRGCAT HPRSIAERER RTRISKRLKK LQDLVPNMDK 180 QTNTSEMLDT AVEYIKELQS QVEKLKHDQA NCSCAGNQNC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814593.1	1e-137	transcription factor bHLH128-like
Swissprot	Q8H102	2e-46	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A0A9DES0	1e-140	A0A0A9DES0_ARUDO; Uncharacterized protein
STRING	Pavir.J01306.1.p	1e-133	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7071	37	52

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]