PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00892.1.g00310.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 165aa    MW: 17726 Da    PI: 10.3177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00892.1.g00310.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000835577123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C++ F++   L  H  +H
  Zmw_sc00892.1.g00310.1.sm.mk 55 FVCKTCSRAFPTFQALGGHRTSH 77
                                  89**********99998888877 PP
2zf-C2H212.40.00048112134123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++Cp+Cg  F     L  H+r+H
  Zmw_sc00892.1.g00310.1.sm.mk 112 HECPICGLGFEMGQALGGHMRRH 134
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-55181No hitNo description
PfamPF139121.5E-105579IPR007087Zinc finger, C2H2
SMARTSM003550.585577IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.645582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-5109137No hitNo description
PfamPF139124.7E-11112137IPR007087Zinc finger, C2H2
SMARTSM003550.17112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKHPREEQEV SLALSLSTDS SASSSTSSTG GGAASSNKRA RRRGPVKATS GEGDFVCKTC  60
SRAFPTFQAL GGHRTSHLRG RHGLELGVVG AKALRQHRAA DTANSAKPKQ QHECPICGLG  120
FEMGQALGGH MRRHREEMAA GDDWVWRPQE KIVTAEPPVL LQLFA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198423.15e-66zinc finger protein ZAT8-like
TrEMBLA0A1E5V1M38e-68A0A1E5V1M3_9POAL; Uncharacterized protein
STRINGPavir.J00894.1.p2e-65(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117