PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00892.1.g00340.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 152aa    MW: 15961.2 Da    PI: 9.6148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00892.1.g00340.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000994466123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C+++F++   L  H  +H
  Zmw_sc00892.1.g00340.1.sm.mk 44 FECKTCSRRFPSFQALGGHRASH 66
                                  89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-742110No hitNo description
PfamPF139124.4E-134368IPR007087Zinc finger, C2H2
SMARTSM003550.274466IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1184471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
PfamPF139128.0E-887111IPR007087Zinc finger, C2H2
SMARTSM003558.188110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MKRLTFGQEE PEVSIISVAQ EVMLLLACAG GGGGEPSASS PRVFECKTCS RRFPSFQALG  60
GHRASHKRPR QQGTGAAGTA EPAKARAHGC GVCGVEFALG QALGGHMKRH RTVVGSASDD  120
RGLPEAEAER KRKADEARAR GMLSLDLNIA PP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795407.13e-58zinc finger protein ZAT12-like
TrEMBLA0A2T7BZ261e-57A0A2T7BZ26_9POAL; Uncharacterized protein
STRINGPavir.Ib04509.1.p5e-50(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157