PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00897.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 200aa MW: 21052.2 Da PI: 6.8732

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00897.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	24.6	2.9e-08	154	200	2	48
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteA 48 ++lL cA av++g+l+++q+l l elas +gd+++Rlaa+ ++A Zmw_sc00897.1.g00010.1.am.mk 154 EQLLNPCAAAVEAGNLSRVQHLFYVLGELASFSGDANHRLAAHGLRA 200 689***************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.301	127	200	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-5	154	200	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MHASSCELAC MKAMNCREQE HHELEATASN NGLDWIEDSI SFLTADFDIG GWWSSAPPAA 60 QQDDIGSVVA QTLSPPAPLP TTSSPLPQAS PSIASPAVSS PSEPSSKKRK SPGHRASGQS 120 GSNQRRRAEQ DRQVGKKGGG KGGAGSDRDT RWAEQLLNPC AAAVEAGNLS RVQHLFYVLG 180 ELASFSGDAN HRLAAHGLRA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318969.1	1e-89	nodulation-signaling pathway 1 protein
TrEMBL	A0A1E5VYC7	4e-90	A0A1E5VYC7_9POAL; Nodulation-signaling pathway 1 protein
STRING	GRMZM2G359304_P01	2e-81	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6135	28	54