PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00897.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 198aa MW: 21946.1 Da PI: 10.5759

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00897.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.4	2e-32	42	98	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rakle+++kl k r+pylheSRh+hA++R RgsgGrF Zmw_sc00897.1.g00130.1.am.mkhc 42 EEPIFVNAKQYHAILRRRQARAKLEAQNKL-VKVRRPYLHESRHRHAMKRVRGSGGRF 98 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-36	40	101	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.024	41	101	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-27	43	98	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.9E-25	44	66	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	46	66	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.9E-25	75	98	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MTTILLLEMD CYPVHSTPNY VHPQINGTAN SRLPLPIEPA AEEPIFVNAK QYHAILRRRQ 60 ARAKLEAQNK LVKVRRPYLH ESRHRHAMKR VRGSGGRFLN KKELQEQQQK AVPSLKTPTG 120 GVSKMGDVGN RCTESSTPWL PSTPTSTGIS SVSNGGGMLA HQEHINFSTF DPSMGFNAQN 180 GGEKMAANGV CYRTPIMR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-25	42	118	2	72	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	91	RHRHAMKRVR

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984044.1	4e-76	nuclear transcription factor Y subunit A-4 isoform X1
Refseq	XP_004984045.1	4e-76	nuclear transcription factor Y subunit A-4 isoform X1
Refseq	XP_004984046.1	3e-76	nuclear transcription factor Y subunit A-4 isoform X2
Swissprot	Q9LVJ7	3e-38	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	A0A0A9LTJ8	7e-80	A0A0A9LTJ8_ARUDO; Uncharacterized protein
STRING	Si036728m	1e-75	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1373	38	121

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]