PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00900.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 193aa MW: 20562.2 Da PI: 10.4331

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00900.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	65.2	1.4e-20	149	193	4	48
STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +++C a+l++ak+yh+rhkvCe+h+ka vv+v+g++qrfCqqCsr Zmw_sc00900.1.g00200.1.am.mk 149 ADRCGANLADAKRYHKRHKVCETHAKAHVVIVAGRQQRFCQQCSR 193 689*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	17.512	144	193	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	5.1E-19	149	193	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.49E-18	149	193	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.5E-16	149	193	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MWFLYTYSRT AYAHVPRHGT GPHVRAVSTH VARWQDLFIS LSPFFPTAPA SSRPPSAHEH 60 ELKATAAPAP PRQPAGSYPS SPSTAPPPPP NLATMDRRDR TRRSTSAAAS MAALAAAAAA 120 GEGVENGTAT AMAEDMNTPT LLTGAASGAD RCGANLADAK RYHKRHKVCE THAKAHVVIV 180 AGRQQRFCQQ CSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	7e-16	150	193	9	52	squamosa promoter-binding protein-like 12

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP60778	2	2