PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00904.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 234aa    MW: 25164.4 Da    PI: 10.5102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00904.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.59.2e-1080126252
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52 
                                   +++GV+ +   grW+ e r       r   r++lg+f t+eeA++ ++ +  +
  Zmw_sc00904.1.g00060.1.sm.mk  80 RFRGVYARQ-PGRWAMEFRSH-----RpkVRHWLGTFATEEEAKATYDTFEAR 126
                                   69***9887.9****996663.....455*******************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.1E-480130IPR001471AP2/ERF domain
PfamPF008471.4E-580123IPR001471AP2/ERF domain
PROSITE profilePS5103212.95880139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-1280123IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1080129IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDARSIRISF TDPDATDSDS GDDASCRTAR SKQKATRKTS IVIFVAGPGF GSKAQMTGST  60
VPRGTKCGAT TAKRTAPKRR FRGVYARQPG RWAMEFRSHR PKVRHWLGTF ATEEEAKATY  120
DTFEARFLSS QPGGVLQPAP KHAGDGGSGR DVHRPLHPPD ENMQQIVLAL KAAMTAAMKS  180
SAEPRSSVVS APSISTLPMA SPPSSAAEKD GIGSHTCDGR AEPAICLHLF LFHW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974648.13e-47dehydration-responsive element-binding protein 1E
TrEMBLK3YM526e-46K3YM52_SETIT; Uncharacterized protein
STRINGSi015330m1e-46(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140032023