PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00909.1.g00260.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 226aa    MW: 25300.9 Da    PI: 5.3472
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00909.1.g00260.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B384.68.9e-2743132192
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   f+kvltpsdv+k++rlv+pk++ae++  +  ++++l +ed+ g  W+++++y+++s++yv+tkGW+ Fv+a  L +gD+v 
  Zmw_sc00909.1.g00260.1.am.mk  43 FDKVLTPSDVGKLNRLVVPKQHAERFFPEAGNGTQLCFEDRAGAPWRFRYSYWGSSQSYVMTKGWSLFVRAASLAAGDTVS 123
                                   89************************666678889********************************************** PP

                                   EEE-SSSEE.. CS
                            B3  82 Fkldgrsefel 92 
                                   F++    ++++
  Zmw_sc00909.1.g00260.1.am.mk 124 FSR--GAGGRY 132
                                   *93..345555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-3636140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-2740144IPR015300DNA-binding pseudobarrel domain
CDDcd100179.73E-2541134No hitNo description
PROSITE profilePS5086313.40843140IPR003340B3 DNA binding domain
SMARTSM010192.3E-1943140IPR003340B3 DNA binding domain
PfamPF023627.5E-2443130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MRMDLSLGTL VEATREVQEE HQADLGHQDR RQHGDAAERE HMFDKVLTPS DVGKLNRLVV  60
PKQHAERFFP EAGNGTQLCF EDRAGAPWRF RYSYWGSSQS YVMTKGWSLF VRAASLAAGD  120
TVSFSRGAGG RYFIDYRHCQ RRCQEISFGD TAAMSAWPWV QRTSSMTGGE GANATNPVSG  180
PPGIRHHDAE VGPSRAKCFR LFGFNVECSR DDDAAMEDEE DVDDDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-43371372111B3 domain-containing transcription factor NGA1
5os9_B7e-43371372111B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822547.17e-89putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD53e-71Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A2S3I0H62e-87A0A2S3I0H6_9POAL; Uncharacterized protein
STRINGGRMZM2G180168_P011e-86(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426